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The map label for this gene is oppA [H]

Identifier: 134301333

GI number: 134301333

Start: 217987

End: 219444

Strand: Direct

Name: oppA [H]

Synonym: FTW_0207

Alternate gene names: 134301333

Gene position: 217987-219444 (Clockwise)

Preceding gene: 134301332

Following gene: 134301334

Centisome position: 11.48

GC content: 34.91

Gene sequence:

>1458_bases
CTGGTTGATTATAATCAAAAATCAGAGGTTATCCCAACAGGGGCATCTAGTTGGAAGATATCTAAAGATGGTAAGACTTA
TACATTTTATCTAAGAAAAAATGCTAAATGGACTAATGGTGGTCCTGTCACAGCAGATGACTATGTCTATTCATACAGAA
GATCTGTAACACCAGAGACTTTAACACGTGCTTATGCTTCATATTTTAATCCAATTGTAAATGCTGTAGCTATTCAGGCT
GGCAAAAAGTCTCCAGAGACACTCGGAGTAAAAGCTCTAGACAAATATACTCTACAGATCAAACTTACAGAACCTAATCC
AACATTTTTGGATTCTTTGACTATTTACGCATTTTTTCCTGTGAATAAAAAGGCGATAGAAAAGTACGGAGATTCTTGGG
CTGCTAAACCCGATACAATCATAAGTAATGGCGCATATAAACTAACAAAATGGATACACAATGGTTATGCTTTGGCAGAG
AAGTCTTCTAATTACTGGGATGCTAAAAATGTAAGTATTGATTCTGTAAAGTATCTAATGATTAATGATGTCTCTAGTGA
TTTAGAGAATTACAAAGCTGGAGGTGAGAGTCTTACCTATAATAATCTACCCGCTAATACAGCAGAGTGGTATAAAGAAC
ACTTTACAAATAATCAATTTCAGCCATCACCTATGCTTGCGCAGGCTTACTTTATATTTAATATGAGAGACACTAAGTTT
CAAGACATTAGGGTACGTAAGGCTTTAAGTATGGTTATCGATAGAAAAGGTATCGCTGAAGGTGTTAAGAAAGGTTTAGT
TACTCCTTCTTATTTGGTTGTGCCAGAAACTGTAGCTGGAGGAAGGTACAAAGATCTGGCAAAAGATATTCCTGATTATG
ATTGGGTAAATGAACCTATAGAGCAAAGAATAAAACAAGCAAGACAACTTCTCAAAGAAGCTGGCTATTCAAAAAAACAT
CCACTTGAGTTTACTATTAATTTCAATACCTCTGATGTTAACCGTTTAATGGCACAAATTTTACAGGGCTCGTGGCAACA
AGATTTTGGAGATTTAGTCAAAGTTAGTATCTTCAATGAAGACTGGAAGGTATATCTTGATAGCTTAAAGAATGGTAATT
TTGATGTTGCTAGAATGGCTTGGATTGCAGACTTTAATCAGCCGAATACTTATACTGAAATGTATACATGTGATAGTGAC
AATAATTACGGACATTATTGCGATAAAGAAGCTGATGAAATTTATAACAAATCACTAACTACTAACTCTATGGATGAGTT
TTATAAGCTGCAGAAAGAGTTGATAATTAAACAAACTGCAGGGTATCCAACTATACCATTATTTACTCAGCCTGCTATAC
AGCTTGTACAACCGTATGTAAAAGGCTTTAAACCAAAAGAAAATGTCATAGGTAGATATAGAGCCAAGCAGCTTTCGATT
AAGCAATCAGAAGTATAA

Upstream 100 bases:

>100_bases
AAATTAATAGTTTAGATTTAAAATAATTAACATTTTTTATATTAGATTATGCTCAAAAAAACATTAATACTCTTATCTTT
GGCTAGTGTACTTATATTGA

Downstream 100 bases:

>100_bases
GTTTTCTAATAAGGTAAAAATATTATGATGAAATTTATTTTTAAAAGAATATTAGGAGCAATTCCAACAGTATTCTTTGT
TATTACAATTACGTTTCTGT

Product: putative oligopeptide permease, ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 485

Protein sequence:

>485_residues
MVDYNQKSEVIPTGASSWKISKDGKTYTFYLRKNAKWTNGGPVTADDYVYSYRRSVTPETLTRAYASYFNPIVNAVAIQA
GKKSPETLGVKALDKYTLQIKLTEPNPTFLDSLTIYAFFPVNKKAIEKYGDSWAAKPDTIISNGAYKLTKWIHNGYALAE
KSSNYWDAKNVSIDSVKYLMINDVSSDLENYKAGGESLTYNNLPANTAEWYKEHFTNNQFQPSPMLAQAYFIFNMRDTKF
QDIRVRKALSMVIDRKGIAEGVKKGLVTPSYLVVPETVAGGRYKDLAKDIPDYDWVNEPIEQRIKQARQLLKEAGYSKKH
PLEFTINFNTSDVNRLMAQILQGSWQQDFGDLVKVSIFNEDWKVYLDSLKNGNFDVARMAWIADFNQPNTYTEMYTCDSD
NNYGHYCDKEADEIYNKSLTTNSMDEFYKLQKELIIKQTAGYPTIPLFTQPAIQLVQPYVKGFKPKENVIGRYRAKQLSI
KQSEV

Sequences:

>Translated_485_residues
MVDYNQKSEVIPTGASSWKISKDGKTYTFYLRKNAKWTNGGPVTADDYVYSYRRSVTPETLTRAYASYFNPIVNAVAIQA
GKKSPETLGVKALDKYTLQIKLTEPNPTFLDSLTIYAFFPVNKKAIEKYGDSWAAKPDTIISNGAYKLTKWIHNGYALAE
KSSNYWDAKNVSIDSVKYLMINDVSSDLENYKAGGESLTYNNLPANTAEWYKEHFTNNQFQPSPMLAQAYFIFNMRDTKF
QDIRVRKALSMVIDRKGIAEGVKKGLVTPSYLVVPETVAGGRYKDLAKDIPDYDWVNEPIEQRIKQARQLLKEAGYSKKH
PLEFTINFNTSDVNRLMAQILQGSWQQDFGDLVKVSIFNEDWKVYLDSLKNGNFDVARMAWIADFNQPNTYTEMYTCDSD
NNYGHYCDKEADEIYNKSLTTNSMDEFYKLQKELIIKQTAGYPTIPLFTQPAIQLVQPYVKGFKPKENVIGRYRAKQLSI
KQSEV
>Mature_485_residues
MVDYNQKSEVIPTGASSWKISKDGKTYTFYLRKNAKWTNGGPVTADDYVYSYRRSVTPETLTRAYASYFNPIVNAVAIQA
GKKSPETLGVKALDKYTLQIKLTEPNPTFLDSLTIYAFFPVNKKAIEKYGDSWAAKPDTIISNGAYKLTKWIHNGYALAE
KSSNYWDAKNVSIDSVKYLMINDVSSDLENYKAGGESLTYNNLPANTAEWYKEHFTNNQFQPSPMLAQAYFIFNMRDTKF
QDIRVRKALSMVIDRKGIAEGVKKGLVTPSYLVVPETVAGGRYKDLAKDIPDYDWVNEPIEQRIKQARQLLKEAGYSKKH
PLEFTINFNTSDVNRLMAQILQGSWQQDFGDLVKVSIFNEDWKVYLDSLKNGNFDVARMAWIADFNQPNTYTEMYTCDSD
NNYGHYCDKEADEIYNKSLTTNSMDEFYKLQKELIIKQTAGYPTIPLFTQPAIQLVQPYVKGFKPKENVIGRYRAKQLSI
KQSEV

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789397, Length=485, Percent_Identity=34.2268041237113, Blast_Score=276, Evalue=2e-75,
Organism=Escherichia coli, GI1787495, Length=476, Percent_Identity=34.6638655462185, Blast_Score=266, Evalue=2e-72,
Organism=Escherichia coli, GI87081878, Length=467, Percent_Identity=33.6188436830835, Blast_Score=260, Evalue=1e-70,
Organism=Escherichia coli, GI1789966, Length=503, Percent_Identity=25.844930417495, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1787052, Length=477, Percent_Identity=24.3186582809224, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1789887, Length=426, Percent_Identity=24.6478873239437, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787762, Length=459, Percent_Identity=21.7864923747277, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 55486; Mature: 55486

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDYNQKSEVIPTGASSWKISKDGKTYTFYLRKNAKWTNGGPVTADDYVYSYRRSVTPET
CCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHH
LTRAYASYFNPIVNAVAIQAGKKSPETLGVKALDKYTLQIKLTEPNPTFLDSLTIYAFFP
HHHHHHHHHHHHHHHHHHHCCCCCCHHCCCEEEEEEEEEEEEECCCCCHHCCEEEEEEEC
VNKKAIEKYGDSWAAKPDTIISNGAYKLTKWIHNGYALAEKSSNYWDAKNVSIDSVKYLM
CCHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEE
INDVSSDLENYKAGGESLTYNNLPANTAEWYKEHFTNNQFQPSPMLAQAYFIFNMRDTKF
EECHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCHHEEEEEEEECCCCCH
QDIRVRKALSMVIDRKGIAEGVKKGLVTPSYLVVPETVAGGRYKDLAKDIPDYDWVNEPI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCHH
EQRIKQARQLLKEAGYSKKHPLEFTINFNTSDVNRLMAQILQGSWQQDFGDLVKVSIFNE
HHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCHHHHHHCEEEEEEECC
DWKVYLDSLKNGNFDVARMAWIADFNQPNTYTEMYTCDSDNNYGHYCDKEADEIYNKSLT
CHHHHHHHHCCCCCCHHHEEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCCC
TNSMDEFYKLQKELIIKQTAGYPTIPLFTQPAIQLVQPYVKGFKPKENVIGRYRAKQLSI
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
KQSEV
HHCCC
>Mature Secondary Structure
MVDYNQKSEVIPTGASSWKISKDGKTYTFYLRKNAKWTNGGPVTADDYVYSYRRSVTPET
CCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHH
LTRAYASYFNPIVNAVAIQAGKKSPETLGVKALDKYTLQIKLTEPNPTFLDSLTIYAFFP
HHHHHHHHHHHHHHHHHHHCCCCCCHHCCCEEEEEEEEEEEEECCCCCHHCCEEEEEEEC
VNKKAIEKYGDSWAAKPDTIISNGAYKLTKWIHNGYALAEKSSNYWDAKNVSIDSVKYLM
CCHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEE
INDVSSDLENYKAGGESLTYNNLPANTAEWYKEHFTNNQFQPSPMLAQAYFIFNMRDTKF
EECHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCHHEEEEEEEECCCCCH
QDIRVRKALSMVIDRKGIAEGVKKGLVTPSYLVVPETVAGGRYKDLAKDIPDYDWVNEPI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCHH
EQRIKQARQLLKEAGYSKKHPLEFTINFNTSDVNRLMAQILQGSWQQDFGDLVKVSIFNE
HHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCHHHHHHCEEEEEEECC
DWKVYLDSLKNGNFDVARMAWIADFNQPNTYTEMYTCDSDNNYGHYCDKEADEIYNKSLT
CHHHHHHHHCCCCCCHHHEEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCCC
TNSMDEFYKLQKELIIKQTAGYPTIPLFTQPAIQLVQPYVKGFKPKENVIGRYRAKQLSI
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
KQSEV
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2821267; 3525163; 11677609; 8202710; 8747465; 10422831; 10438628 [H]