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The map label for this gene is yhcM [H]

Identifier: 134301268

GI number: 134301268

Start: 141156

End: 142223

Strand: Direct

Name: yhcM [H]

Synonym: FTW_0130

Alternate gene names: 134301268

Gene position: 141156-142223 (Clockwise)

Preceding gene: 134301267

Following gene: 134301269

Centisome position: 7.44

GC content: 29.68

Gene sequence:

>1068_bases
ATGAAACTTGAGAATATTTATCTTCAAAAAATTCGTGAACTTGACTTAAAAGTTGATTCTTTACAACTTGAGGCTATTAG
ACGCTTGCAAGAAATAGTCGATCAACTTTATTCAAAAAAAAAATCTAAACTGAGATTGTTTAAAAAATCTTTTTATCCTG
CTATCAAAGGATTATATATGTGGGGTGGTGTAGGTCGTGGTAAGACCTTTATAATGGATATCTTCTATAATAATCTCACA
ATAAAGAATAAAAAAAGACAGCATTTCTCGCATTTTATGAAAAATATTCATACGCAATTGAGAAAATATCAGGGTGAAAA
AAACCCAATATCAAAAGTTGCGTTTGATATGGCAAAGCAAACACAAATTATATGTTTTGATGAGTTCTTCGTTGAAGATA
TTGCTGATGCTATGATCTTGGGGAGTATTTTTACTGAGTTATTTAAGTTTGGTGTAGTGTTAGTAGCAACCTCAAATATA
GAGCCAGAAAAGCTTTATAAAAATGGTTTACAACGCGAATTATTTTTACCTGCTACTGATGTATTACTTAAAAATGTTGA
TGTATTAAACTTAGATTCTGGAGTTGATTACAGATTTCGTTTGCCTACTGAGTATCTAAATTATCTCTATCCATATAATG
AACATAATCGTAAAAATTTCTTTGATAAATTCTTCCTGAGAAATAGTCATTTTGATAAAGATCTTAGTATACGAGTCTTA
GCTAGAGATATCCCAACAATATTGCTAAGCCATAAAGATGTTTGCTTTGACTTTAAGGTTATTTGTGGTGATGGTAGAAG
TGCCCATGATTATATTGATATTTGCCATAAATATGAACAGTTATTTATCTATAATTTAGTTGTTTTTGGACCTCATAATG
AGGATATGGCTAGACGCTTTATTGCATTAATAGATGAGTTTTATGATCAGAATAAAAAAGTTGTGATTCTTGCTAATTGT
GATTTTAAGGATTTATATAATGGTGAAAGACTCAAATTTGAGTTTCAACGGACTATAAGTCGGTTAAATGATATGCAGAA
TTCACGTTTTGGAGTTATAAATGAATAA

Upstream 100 bases:

>100_bases
ATATAAATGCATATCATCATGCTTTTTTAATCCTTGTATTTAGCATGATCGTATCATTCTTTTTGCTGATTTTAGTAAAA
GATAAAGAAGTTAAATAAAA

Downstream 100 bases:

>100_bases
GGTTGAGCTTATTGAGGTTACAGAGGATGTAATAGATCAACGTATAGATAATTTTCTTTTAAGTAGATTTTCTCGATTAC
CAAAATCTTTAATTTATCGC

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MKLENIYLQKIRELDLKVDSLQLEAIRRLQEIVDQLYSKKKSKLRLFKKSFYPAIKGLYMWGGVGRGKTFIMDIFYNNLT
IKNKKRQHFSHFMKNIHTQLRKYQGEKNPISKVAFDMAKQTQIICFDEFFVEDIADAMILGSIFTELFKFGVVLVATSNI
EPEKLYKNGLQRELFLPATDVLLKNVDVLNLDSGVDYRFRLPTEYLNYLYPYNEHNRKNFFDKFFLRNSHFDKDLSIRVL
ARDIPTILLSHKDVCFDFKVICGDGRSAHDYIDICHKYEQLFIYNLVVFGPHNEDMARRFIALIDEFYDQNKKVVILANC
DFKDLYNGERLKFEFQRTISRLNDMQNSRFGVINE

Sequences:

>Translated_355_residues
MKLENIYLQKIRELDLKVDSLQLEAIRRLQEIVDQLYSKKKSKLRLFKKSFYPAIKGLYMWGGVGRGKTFIMDIFYNNLT
IKNKKRQHFSHFMKNIHTQLRKYQGEKNPISKVAFDMAKQTQIICFDEFFVEDIADAMILGSIFTELFKFGVVLVATSNI
EPEKLYKNGLQRELFLPATDVLLKNVDVLNLDSGVDYRFRLPTEYLNYLYPYNEHNRKNFFDKFFLRNSHFDKDLSIRVL
ARDIPTILLSHKDVCFDFKVICGDGRSAHDYIDICHKYEQLFIYNLVVFGPHNEDMARRFIALIDEFYDQNKKVVILANC
DFKDLYNGERLKFEFQRTISRLNDMQNSRFGVINE
>Mature_355_residues
MKLENIYLQKIRELDLKVDSLQLEAIRRLQEIVDQLYSKKKSKLRLFKKSFYPAIKGLYMWGGVGRGKTFIMDIFYNNLT
IKNKKRQHFSHFMKNIHTQLRKYQGEKNPISKVAFDMAKQTQIICFDEFFVEDIADAMILGSIFTELFKFGVVLVATSNI
EPEKLYKNGLQRELFLPATDVLLKNVDVLNLDSGVDYRFRLPTEYLNYLYPYNEHNRKNFFDKFFLRNSHFDKDLSIRVL
ARDIPTILLSHKDVCFDFKVICGDGRSAHDYIDICHKYEQLFIYNLVVFGPHNEDMARRFIALIDEFYDQNKKVVILANC
DFKDLYNGERLKFEFQRTISRLNDMQNSRFGVINE

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=393, Percent_Identity=34.0966921119593, Blast_Score=196, Evalue=3e-50,
Organism=Escherichia coli, GI1789627, Length=359, Percent_Identity=39.2757660167131, Blast_Score=281, Evalue=4e-77,
Organism=Caenorhabditis elegans, GI17505769, Length=415, Percent_Identity=30.6024096385542, Blast_Score=183, Evalue=1e-46,
Organism=Saccharomyces cerevisiae, GI6320783, Length=317, Percent_Identity=30.9148264984227, Blast_Score=148, Evalue=1e-36,
Organism=Drosophila melanogaster, GI20129913, Length=356, Percent_Identity=32.3033707865169, Blast_Score=156, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42120; Mature: 42120

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLENIYLQKIRELDLKVDSLQLEAIRRLQEIVDQLYSKKKSKLRLFKKSFYPAIKGLYM
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGGVGRGKTFIMDIFYNNLTIKNKKRQHFSHFMKNIHTQLRKYQGEKNPISKVAFDMAKQ
CCCCCCCCEEEEEEEECCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
TQIICFDEFFVEDIADAMILGSIFTELFKFGVVLVATSNIEPEKLYKNGLQRELFLPATD
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCCCCEECCCHHH
VLLKNVDVLNLDSGVDYRFRLPTEYLNYLYPYNEHNRKNFFDKFFLRNSHFDKDLSIRVL
HHHCCCCEEECCCCCCEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEH
ARDIPTILLSHKDVCFDFKVICGDGRSAHDYIDICHKYEQLFIYNLVVFGPHNEDMARRF
HHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHH
IALIDEFYDQNKKVVILANCDFKDLYNGERLKFEFQRTISRLNDMQNSRFGVINE
HHHHHHHHCCCCCEEEEECCCHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKLENIYLQKIRELDLKVDSLQLEAIRRLQEIVDQLYSKKKSKLRLFKKSFYPAIKGLYM
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WGGVGRGKTFIMDIFYNNLTIKNKKRQHFSHFMKNIHTQLRKYQGEKNPISKVAFDMAKQ
CCCCCCCCEEEEEEEECCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
TQIICFDEFFVEDIADAMILGSIFTELFKFGVVLVATSNIEPEKLYKNGLQRELFLPATD
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCCCCEECCCHHH
VLLKNVDVLNLDSGVDYRFRLPTEYLNYLYPYNEHNRKNFFDKFFLRNSHFDKDLSIRVL
HHHCCCCEEECCCCCCEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEH
ARDIPTILLSHKDVCFDFKVICGDGRSAHDYIDICHKYEQLFIYNLVVFGPHNEDMARRF
HHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHH
IALIDEFYDQNKKVVILANCDFKDLYNGERLKFEFQRTISRLNDMQNSRFGVINE
HHHHHHHHCCCCCEEEEECCCHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]