Click here to switch to the map view.

The map label for this gene is 134300377

Identifier: 134300377

GI number: 134300377

Start: 2761058

End: 2762932

Strand: Reverse

Name: 134300377

Synonym: Dred_2538

Alternate gene names: NA

Gene position: 2762932-2761058 (Counterclockwise)

Preceding gene: 134300378

Following gene: 134300376

Centisome position: 76.58

GC content: 44.37

Gene sequence:

>1875_bases
ATGAATAAACTGGATAAGATACTTGCCCGAGTTCAAAAGCCGTCACGCTATGCTGGCGGTGAATGGAACGCAGTGAAAAA
GGATTGGGATCAGGTGGATGTAAAAATGGCCTTTGCTTTTCCGGATGTCTACGAAGTAGGCATGTCCCATCTGGGCCTAC
AGATCCTTTACCATGTGGTGAATAAGCGAAAGGATGCCTTGATGGAAAGGGTCTTTGCACCTTGGACAGATATGGAAGAA
CAAATTCGCAAAGAAAAAGTACTATTATTTAGCCTGGAATCCCAGCGTCCACTGGTGGATTTCGATATTCTAGGGTTTAC
TTTGCAGTATGAAATGAGTTTCAGCAATATCCTAAATATGATGGATCTGGCTGGGCTACCGATACGTTCTAAACATCGGG
ATGCCAACATGCCCCTAGTTATTGCAGGGGGACCCTGTGCCTTTAATCCTGAACCCATTGCCGATTTTATTGACCTTTTC
GTGATCGGAGAAGGGGAAGAAGTCATCCATGAATTAATTGATGTTTACAAGGAACTGAAGGAGAAGGGGACTAACCGCCA
GGATATGCTGTTATATTTTGCTAAACACATTCCTGGTGTCTATGTACCCTCCTTATACGATGTCAAATACAACGACGACC
AAACTGTTAAAGCAATAGTGCCTACTAAGGATGGTGTCCCCGAAAAAATTGGCAAAAGAATTATAAAGGATTTTGATAAC
GTGGACTTTCCCACCAACCCCATAGTACCTACCATGGGTGTTGTTCATGACCGGGTGATGGTGGAAGTCCTACGTGGTTG
CACCCGGGGGTGTCGTTTTTGTCAGGCTGGTGTTTTATACAGACCTGTCAGAGAGAAAAAGCCGGAAACCTTAGTCCGAC
AGGTAGAAGAAATGATTGCCAATACTGGCCATGATGAGATTTCTCTTACTTCGTTAAGCACTGCAGACTACACGGGGGTA
GCACCTCTGGTGAAAAATCTACTGGATATTTATGGGGAACGGGGGGTTAATGTTTCCTTGCCTTCTCTACGGTTAGATGC
TTTCTCCATTGATCTGGCCAAAGAAGTGCAAAAAGTACGCAAGAGTGGGTTAACCTTTGCTCCGGAAGCCGGTACCCAGC
GTTTACGAGATGTTATTAATAAAAATGTAACAGAACAGAATCTTGTTGATGCGGTTACTTCCGCTTTTCAAAATGGCTGG
TCTTCTGTTAAACTCTACTTTATGATTGGGCTGCCCACTGAAACCTATGAGGATATTGATGGTATTGCAGAAATGGCTAA
GAAAGTGGTGAAAATTGGCCAAGAGTGTGGCGTACCCAGGGGACGCTTAAAAGTAACGGTAAGTACGTCATCCTTTGTAC
CTAAATCCCATACTTCTTTTCAATGGGAACCCCAGAATACTTTGCAGGAACTACGCGATAAGCAAAAATACCTAAAAGAA
AGATTAAGGGATAAACGGATCTCTTATAACTGGCATGACCCGGAGACCAGTTTCCTAGAGGCTGTCTTTGCAAAGGGAGA
TCGTCGTTTGGGCAATGTTTTGGAAACTGCTTGGTCCAAAGGTGCCCGGTTTGACGGATGGTCGGAACATTTTAACTATA
CTCTTTGGATGGAGGCCTTTACCGGCGAAAAATTGGATCCAAAGTGGTATGCATATCGAGAAATCAGTTATGAAGAAGTG
TTGCCCTGGGATCACATTGAAGCAGGGGTAAGCAAAAGATTTTTAATGAGAGAACACAAAAAGGCAATGGGGAGTGAACC
CACCATGGACTGCCGAAATGGTAAGTGCACCGGCTGTGGTCTTTGCCCAACCCTTGAAATTAGACCAATGATTTTGGGAG
GTGTGGATATTGCCCCGATACAGGGTGAAGTATAG

Upstream 100 bases:

>100_bases
TACATGTAGAAAGAGAAAAAAGGAATATTTTTCAAAGCCAAATTGGGCAATAATAGAATAGCAGTATTGTTATTGGACCT
GTTATAAATGGAGGAACAGA

Downstream 100 bases:

>100_bases
TAAAGAAGGTCCGGCCCGGTATAGCTCTCATCTGGACATGGTGCGGTTCTTTGATCGGTCTACCAGAAGGGCGAAGTTAC
CAGTGGCATTTTCTGAGGGC

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 624; Mature: 624

Protein sequence:

>624_residues
MNKLDKILARVQKPSRYAGGEWNAVKKDWDQVDVKMAFAFPDVYEVGMSHLGLQILYHVVNKRKDALMERVFAPWTDMEE
QIRKEKVLLFSLESQRPLVDFDILGFTLQYEMSFSNILNMMDLAGLPIRSKHRDANMPLVIAGGPCAFNPEPIADFIDLF
VIGEGEEVIHELIDVYKELKEKGTNRQDMLLYFAKHIPGVYVPSLYDVKYNDDQTVKAIVPTKDGVPEKIGKRIIKDFDN
VDFPTNPIVPTMGVVHDRVMVEVLRGCTRGCRFCQAGVLYRPVREKKPETLVRQVEEMIANTGHDEISLTSLSTADYTGV
APLVKNLLDIYGERGVNVSLPSLRLDAFSIDLAKEVQKVRKSGLTFAPEAGTQRLRDVINKNVTEQNLVDAVTSAFQNGW
SSVKLYFMIGLPTETYEDIDGIAEMAKKVVKIGQECGVPRGRLKVTVSTSSFVPKSHTSFQWEPQNTLQELRDKQKYLKE
RLRDKRISYNWHDPETSFLEAVFAKGDRRLGNVLETAWSKGARFDGWSEHFNYTLWMEAFTGEKLDPKWYAYREISYEEV
LPWDHIEAGVSKRFLMREHKKAMGSEPTMDCRNGKCTGCGLCPTLEIRPMILGGVDIAPIQGEV

Sequences:

>Translated_624_residues
MNKLDKILARVQKPSRYAGGEWNAVKKDWDQVDVKMAFAFPDVYEVGMSHLGLQILYHVVNKRKDALMERVFAPWTDMEE
QIRKEKVLLFSLESQRPLVDFDILGFTLQYEMSFSNILNMMDLAGLPIRSKHRDANMPLVIAGGPCAFNPEPIADFIDLF
VIGEGEEVIHELIDVYKELKEKGTNRQDMLLYFAKHIPGVYVPSLYDVKYNDDQTVKAIVPTKDGVPEKIGKRIIKDFDN
VDFPTNPIVPTMGVVHDRVMVEVLRGCTRGCRFCQAGVLYRPVREKKPETLVRQVEEMIANTGHDEISLTSLSTADYTGV
APLVKNLLDIYGERGVNVSLPSLRLDAFSIDLAKEVQKVRKSGLTFAPEAGTQRLRDVINKNVTEQNLVDAVTSAFQNGW
SSVKLYFMIGLPTETYEDIDGIAEMAKKVVKIGQECGVPRGRLKVTVSTSSFVPKSHTSFQWEPQNTLQELRDKQKYLKE
RLRDKRISYNWHDPETSFLEAVFAKGDRRLGNVLETAWSKGARFDGWSEHFNYTLWMEAFTGEKLDPKWYAYREISYEEV
LPWDHIEAGVSKRFLMREHKKAMGSEPTMDCRNGKCTGCGLCPTLEIRPMILGGVDIAPIQGEV
>Mature_624_residues
MNKLDKILARVQKPSRYAGGEWNAVKKDWDQVDVKMAFAFPDVYEVGMSHLGLQILYHVVNKRKDALMERVFAPWTDMEE
QIRKEKVLLFSLESQRPLVDFDILGFTLQYEMSFSNILNMMDLAGLPIRSKHRDANMPLVIAGGPCAFNPEPIADFIDLF
VIGEGEEVIHELIDVYKELKEKGTNRQDMLLYFAKHIPGVYVPSLYDVKYNDDQTVKAIVPTKDGVPEKIGKRIIKDFDN
VDFPTNPIVPTMGVVHDRVMVEVLRGCTRGCRFCQAGVLYRPVREKKPETLVRQVEEMIANTGHDEISLTSLSTADYTGV
APLVKNLLDIYGERGVNVSLPSLRLDAFSIDLAKEVQKVRKSGLTFAPEAGTQRLRDVINKNVTEQNLVDAVTSAFQNGW
SSVKLYFMIGLPTETYEDIDGIAEMAKKVVKIGQECGVPRGRLKVTVSTSSFVPKSHTSFQWEPQNTLQELRDKQKYLKE
RLRDKRISYNWHDPETSFLEAVFAKGDRRLGNVLETAWSKGARFDGWSEHFNYTLWMEAFTGEKLDPKWYAYREISYEEV
LPWDHIEAGVSKRFLMREHKKAMGSEPTMDCRNGKCTGCGLCPTLEIRPMILGGVDIAPIQGEV

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 70952; Mature: 70952

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00197 2FE2S_FER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLDKILARVQKPSRYAGGEWNAVKKDWDQVDVKMAFAFPDVYEVGMSHLGLQILYHVV
CCHHHHHHHHHCCCCCCCCCCCCHHHHCHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHH
NKRKDALMERVFAPWTDMEEQIRKEKVLLFSLESQRPLVDFDILGFTLQYEMSFSNILNM
HHHHHHHHHHHHCCCCCHHHHHHHHHEEEEEECCCCCCEEEEEEEEEEEEECCHHHHHHH
MDLAGLPIRSKHRDANMPLVIAGGPCAFNPEPIADFIDLFVIGEGEEVIHELIDVYKELK
HHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHEECCCHHHHHHHHHHHHHHH
EKGTNRQDMLLYFAKHIPGVYVPSLYDVKYNDDQTVKAIVPTKDGVPEKIGKRIIKDFDN
HHCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHCCC
VDFPTNPIVPTMGVVHDRVMVEVLRGCTRGCRFCQAGVLYRPVREKKPETLVRQVEEMIA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHCCHHHHHHHHHHHHH
NTGHDEISLTSLSTADYTGVAPLVKNLLDIYGERGVNVSLPSLRLDAFSIDLAKEVQKVR
CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCEEEHHHHHHHHHHHHHHH
KSGLTFAPEAGTQRLRDVINKNVTEQNLVDAVTSAFQNGWSSVKLYFMIGLPTETYEDID
HCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHH
GIAEMAKKVVKIGQECGVPRGRLKVTVSTSSFVPKSHTSFQWEPQNTLQELRDKQKYLKE
HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHHHH
RLRDKRISYNWHDPETSFLEAVFAKGDRRLGNVLETAWSKGARFDGWSEHFNYTLWMEAF
HHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHCCEEEEEEEC
TGEKLDPKWYAYREISYEEVLPWDHIEAGVSKRFLMREHKKAMGSEPTMDCRNGKCTGCG
CCCCCCCCEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
LCPTLEIRPMILGGVDIAPIQGEV
CCCCCCCCEEEECCCEECCCCCCC
>Mature Secondary Structure
MNKLDKILARVQKPSRYAGGEWNAVKKDWDQVDVKMAFAFPDVYEVGMSHLGLQILYHVV
CCHHHHHHHHHCCCCCCCCCCCCHHHHCHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHH
NKRKDALMERVFAPWTDMEEQIRKEKVLLFSLESQRPLVDFDILGFTLQYEMSFSNILNM
HHHHHHHHHHHHCCCCCHHHHHHHHHEEEEEECCCCCCEEEEEEEEEEEEECCHHHHHHH
MDLAGLPIRSKHRDANMPLVIAGGPCAFNPEPIADFIDLFVIGEGEEVIHELIDVYKELK
HHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHEECCCHHHHHHHHHHHHHHH
EKGTNRQDMLLYFAKHIPGVYVPSLYDVKYNDDQTVKAIVPTKDGVPEKIGKRIIKDFDN
HHCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHCCC
VDFPTNPIVPTMGVVHDRVMVEVLRGCTRGCRFCQAGVLYRPVREKKPETLVRQVEEMIA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHCCHHHHHHHHHHHHH
NTGHDEISLTSLSTADYTGVAPLVKNLLDIYGERGVNVSLPSLRLDAFSIDLAKEVQKVR
CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCEEEHHHHHHHHHHHHHHH
KSGLTFAPEAGTQRLRDVINKNVTEQNLVDAVTSAFQNGWSSVKLYFMIGLPTETYEDID
HCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHH
GIAEMAKKVVKIGQECGVPRGRLKVTVSTSSFVPKSHTSFQWEPQNTLQELRDKQKYLKE
HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHHHH
RLRDKRISYNWHDPETSFLEAVFAKGDRRLGNVLETAWSKGARFDGWSEHFNYTLWMEAF
HHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHCCEEEEEEEC
TGEKLDPKWYAYREISYEEVLPWDHIEAGVSKRFLMREHKKAMGSEPTMDCRNGKCTGCG
CCCCCCCCEEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
LCPTLEIRPMILGGVDIAPIQGEV
CCCCCCCCEEEECCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]