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The map label for this gene is rbpE [H]

Identifier: 134300357

GI number: 134300357

Start: 2738813

End: 2739070

Strand: Reverse

Name: rbpE [H]

Synonym: Dred_2518

Alternate gene names: 134300357

Gene position: 2739070-2738813 (Counterclockwise)

Preceding gene: 134300358

Following gene: 134300356

Centisome position: 75.91

GC content: 43.41

Gene sequence:

>258_bases
ATGGCAACTTTATACGTTGGAAATCTACCTTGGTCTACTAAAGCAGAGGATTTAGCCAGTGCTTTTGAACAATATGGTGA
AGTTCTCAGTAGCAGGGTTATTACAGATCGAGAAACCGGTCGTTCCCGTGGTTTTGGTTTTGTTGAGGTTAATGATACTG
ATGCAGACAAAATGATTGCAGCCCTTAACGGAACTGAATTGGGTGGTCGGGTTATCACTGTCAACGAAGCAAAAAGCCGC
GAAGCTGGCCAAGTTTAA

Upstream 100 bases:

>100_bases
ATATCTTAGCTGAATCCCTCTGCATTTAGACCGAGTTAAATGCAAATAATACATTCAACGCAGACAAGTAACCAAAGAAC
CATTGAAAGAGGTGACTTTT

Downstream 100 bases:

>100_bases
ACAGACAAAACCTCCATTCCTCCGGGATAGGAGGTTTTTAAAATTATTTAGCGGAGGGTGCAATGGTGAATATAAGTTTT
TTAAAAGAACAGCTAAGTCT

Product: RNP-1-like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 84

Protein sequence:

>85_residues
MATLYVGNLPWSTKAEDLASAFEQYGEVLSSRVITDRETGRSRGFGFVEVNDTDADKMIAALNGTELGGRVITVNEAKSR
EAGQV

Sequences:

>Translated_85_residues
MATLYVGNLPWSTKAEDLASAFEQYGEVLSSRVITDRETGRSRGFGFVEVNDTDADKMIAALNGTELGGRVITVNEAKSR
EAGQV
>Mature_84_residues
ATLYVGNLPWSTKAEDLASAFEQYGEVLSSRVITDRETGRSRGFGFVEVNDTDADKMIAALNGTELGGRVITVNEAKSRE
AGQV

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI14149675, Length=82, Percent_Identity=37.8048780487805, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI4557493, Length=82, Percent_Identity=37.8048780487805, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI4502847, Length=75, Percent_Identity=44, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=79, Percent_Identity=43.0379746835443, Blast_Score=73, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=40.2597402597403, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=40.2597402597403, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=39.4736842105263, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71999552, Length=82, Percent_Identity=41.4634146341463, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71999554, Length=82, Percent_Identity=41.4634146341463, Blast_Score=63, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6321599, Length=83, Percent_Identity=43.3734939759036, Blast_Score=67, Evalue=4e-13,
Organism=Drosophila melanogaster, GI17137710, Length=84, Percent_Identity=41.6666666666667, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24645103, Length=74, Percent_Identity=40.5405405405405, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24582417, Length=78, Percent_Identity=41.025641025641, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI45550943, Length=78, Percent_Identity=41.025641025641, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24582419, Length=78, Percent_Identity=41.025641025641, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24582423, Length=78, Percent_Identity=41.025641025641, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24582421, Length=78, Percent_Identity=41.025641025641, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9169; Mature: 9038

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLYVGNLPWSTKAEDLASAFEQYGEVLSSRVITDRETGRSRGFGFVEVNDTDADKMIA
CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHEEE
ALNGTELGGRVITVNEAKSREAGQV
ECCCCCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure 
ATLYVGNLPWSTKAEDLASAFEQYGEVLSSRVITDRETGRSRGFGFVEVNDTDADKMIA
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHEEE
ALNGTELGGRVITVNEAKSREAGQV
ECCCCCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]