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The map label for this gene is yqeN [H]

Identifier: 134300345

GI number: 134300345

Start: 2726553

End: 2727593

Strand: Reverse

Name: yqeN [H]

Synonym: Dred_2506

Alternate gene names: 134300345

Gene position: 2727593-2726553 (Counterclockwise)

Preceding gene: 134300346

Following gene: 134300343

Centisome position: 75.6

GC content: 42.65

Gene sequence:

>1041_bases
ATGGAATATTACAAAGGTTTGATCAACAGCCTACAGCGGGGGGTTGTTTCTCCGGTATACTTGTTTTATGGAGAAGAGGA
ATACCTGAAAGAAAAGGCTGTGGAGAAATTTAAAGAATTTTTACTGCCACAGGCAGCTGATTTTAACCTGGATCTATTGG
ACGGGGAAGAAGCAGACATTGATACGGTGATTTCTTTTGCAGAAAACATGCCCTTCATGGCAGAACGCAGACTGGTCATC
GTAAAAAATGCTCCATGGTTTTCTGGCAAAGGGAAAAATGAAGCCGGAGGCGAGGACAAAGGAAGTGGTAAGGACACAGT
TCTCTTAAAGTATTTAAATAATCCAGCCAGCACCACTTGTTTAGTCTTTGTTGCCAAGGAAGCAGTAGACCGTCGCAAGA
AGACCTACAAAGAAATTAGTGCAAAGGGACAGGTTATAGACTTCAAAATGTTAAAGCCCTCCGAAATGATCACCTGGGTT
AACCAAATTGTCAAAGGGACTGGTAAAACAATTGAGCCCTCAGCTGCCAGAGCGATAGTAGAAGCCAACGGTAAGTTAGG
TCTATTAAATCTAAAGAATGAAGTAAATAAGCTTATCAGCTATTTGGGTAGCGAACAAGAAATAACCTCCGCCATTGTCG
GGGAGGTTGGTGTTATCAATATTGAGCAAAATATTTTTACAGTAGTGGACGATGCTGTGGCTGGCCATACTTCTAAGGCT
CTAAATGGTATTCGAGAACTTCTTTCTCTTAAGGAACAACCGACTAAAATTTTAGCCCTTTTAGCGCGACAACTTCGCAT
CGCCCTCCAGGCCGAGGCCTTACTTCGGGAAGGCTCCCCTGAGAGAGAAGTTGCTAGAAAAATGGGAATACATGATTTTG
TTATCAAAAAGGCCTTAACACAAATTCGACGGGGGGGGTCCCAGAGAATGAAATGGGCCTTGCAAGAAATTGCAACTATT
GATGCCGCTATAAAAAAAGGCCAGAGAGATTTTCTACCAGCCATTGAAACCATGTTAATTCAATTCGGCCAAATGGAGTA
G

Upstream 100 bases:

>100_bases
GATTATTCGAATTGATGACAGGAGAGATAAAAAGGGGACAATGAAAGGCAAAGTATCTTCTGTGGAAGCTAAATTGATTA
CGCCGGGTGGCACAGACTAA

Downstream 100 bases:

>100_bases
CAAACTAAAAAAACCACCCGCAGGGTGGTTTAATTATTAACCAGCAATTTTATTGAACCGCTTGGTTAGGCGAGATTTTT
TTCTAGCTGCGGCATTTTTA

Product: DNA polymerase III subunit delta

Products: diphosphate; DNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MEYYKGLINSLQRGVVSPVYLFYGEEEYLKEKAVEKFKEFLLPQAADFNLDLLDGEEADIDTVISFAENMPFMAERRLVI
VKNAPWFSGKGKNEAGGEDKGSGKDTVLLKYLNNPASTTCLVFVAKEAVDRRKKTYKEISAKGQVIDFKMLKPSEMITWV
NQIVKGTGKTIEPSAARAIVEANGKLGLLNLKNEVNKLISYLGSEQEITSAIVGEVGVINIEQNIFTVVDDAVAGHTSKA
LNGIRELLSLKEQPTKILALLARQLRIALQAEALLREGSPEREVARKMGIHDFVIKKALTQIRRGGSQRMKWALQEIATI
DAAIKKGQRDFLPAIETMLIQFGQME

Sequences:

>Translated_346_residues
MEYYKGLINSLQRGVVSPVYLFYGEEEYLKEKAVEKFKEFLLPQAADFNLDLLDGEEADIDTVISFAENMPFMAERRLVI
VKNAPWFSGKGKNEAGGEDKGSGKDTVLLKYLNNPASTTCLVFVAKEAVDRRKKTYKEISAKGQVIDFKMLKPSEMITWV
NQIVKGTGKTIEPSAARAIVEANGKLGLLNLKNEVNKLISYLGSEQEITSAIVGEVGVINIEQNIFTVVDDAVAGHTSKA
LNGIRELLSLKEQPTKILALLARQLRIALQAEALLREGSPEREVARKMGIHDFVIKKALTQIRRGGSQRMKWALQEIATI
DAAIKKGQRDFLPAIETMLIQFGQME
>Mature_346_residues
MEYYKGLINSLQRGVVSPVYLFYGEEEYLKEKAVEKFKEFLLPQAADFNLDLLDGEEADIDTVISFAENMPFMAERRLVI
VKNAPWFSGKGKNEAGGEDKGSGKDTVLLKYLNNPASTTCLVFVAKEAVDRRKKTYKEISAKGQVIDFKMLKPSEMITWV
NQIVKGTGKTIEPSAARAIVEANGKLGLLNLKNEVNKLISYLGSEQEITSAIVGEVGVINIEQNIFTVVDDAVAGHTSKA
LNGIRELLSLKEQPTKILALLARQLRIALQAEALLREGSPEREVARKMGIHDFVIKKALTQIRRGGSQRMKWALQEIATI
DAAIKKGQRDFLPAIETMLIQFGQME

Specific function: Unknown

COG id: COG1466

COG function: function code L; DNA polymerase III, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008921
- InterPro:   IPR010372
- InterPro:   IPR005790 [H]

Pfam domain/function: PF06144 DNA_pol3_delta [H]

EC number: 2.7.7.7

Molecular weight: Translated: 38478; Mature: 38478

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYYKGLINSLQRGVVSPVYLFYGEEEYLKEKAVEKFKEFLLPQAADFNLDLLDGEEADI
CHHHHHHHHHHHHHCCCCHHEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCH
DTVISFAENMPFMAERRLVIVKNAPWFSGKGKNEAGGEDKGSGKDTVLLKYLNNPASTTC
HHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHH
LVFVAKEAVDRRKKTYKEISAKGQVIDFKMLKPSEMITWVNQIVKGTGKTIEPSAARAIV
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
EANGKLGLLNLKNEVNKLISYLGSEQEITSAIVGEVGVINIEQNIFTVVDDAVAGHTSKA
CCCCCEEEEECHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCHHHH
LNGIRELLSLKEQPTKILALLARQLRIALQAEALLREGSPEREVARKMGIHDFVIKKALT
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHH
QIRRGGSQRMKWALQEIATIDAAIKKGQRDFLPAIETMLIQFGQME
HHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEYYKGLINSLQRGVVSPVYLFYGEEEYLKEKAVEKFKEFLLPQAADFNLDLLDGEEADI
CHHHHHHHHHHHHHCCCCHHEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCH
DTVISFAENMPFMAERRLVIVKNAPWFSGKGKNEAGGEDKGSGKDTVLLKYLNNPASTTC
HHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHH
LVFVAKEAVDRRKKTYKEISAKGQVIDFKMLKPSEMITWVNQIVKGTGKTIEPSAARAIV
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
EANGKLGLLNLKNEVNKLISYLGSEQEITSAIVGEVGVINIEQNIFTVVDDAVAGHTSKA
CCCCCEEEEECHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCHHHH
LNGIRELLSLKEQPTKILALLARQLRIALQAEALLREGSPEREVARKMGIHDFVIKKALT
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHH
QIRRGGSQRMKWALQEIATIDAAIKKGQRDFLPAIETMLIQFGQME
HHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]