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The map label for this gene is ybeY [C]

Identifier: 134300321

GI number: 134300321

Start: 2703008

End: 2703469

Strand: Reverse

Name: ybeY [C]

Synonym: Dred_2482

Alternate gene names: 134300321

Gene position: 2703469-2703008 (Counterclockwise)

Preceding gene: 134300322

Following gene: 134300320

Centisome position: 74.93

GC content: 45.24

Gene sequence:

>462_bases
ATGGCGGTACTCGTAAATAATTTACAAGAAGAAATATCAGTGGAGGAAAACTTACTTAAACTGGTAGAGTCTGTGGTTAA
GGTAAGCCTTGAATCAGAGGGTTATTCCCCCGATGCCGAGGTGGGTCTGATCTTTGTGGATGATAATTACATTCGTAGTC
TAAACGCGGAATACCGGGGAATTGACAAAGCCACTGATGTTTTGTCCTTTGCCTTGAATGAAGGAGAAGAAATGCCTGAG
GAAGAAGAGGCTGAGGATCTATTGGGGGATATTGTCATATCCCTCCCCACGGCCCAACGTCAGGCTGCTGAATATGGCCA
TAGTTTTAATCGAGAAGTGGCTTATTTGACGGCCCATGGTTCTCTGCACTTGTTAGGCTATGATCACATGACAGAAGAAG
ATCGGCAGGTTATGCGGCAGAAGGAAGAGGGGATATTAGAGAGGCTGGGGATTAATAGATAG

Upstream 100 bases:

>100_bases
GCAATAGCCAATAGCTTCTTGCGGGTACTCTCTGGTATTTTCCATAACCGAATTGAGTATCCTGATATGAAACAGGAGAT
GGAAAGGAGAAAGACTCGGT

Downstream 100 bases:

>100_bases
CCCACAACAGGGTTAGCCATCAGCTATCAGCCCTCAGCCATCGGCTTACGGTGTAAGGCCAAAAGTTGTTAAACCTACTT
TGAAAGGTTACCTATGATGA

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MAVLVNNLQEEISVEENLLKLVESVVKVSLESEGYSPDAEVGLIFVDDNYIRSLNAEYRGIDKATDVLSFALNEGEEMPE
EEEAEDLLGDIVISLPTAQRQAAEYGHSFNREVAYLTAHGSLHLLGYDHMTEEDRQVMRQKEEGILERLGINR

Sequences:

>Translated_153_residues
MAVLVNNLQEEISVEENLLKLVESVVKVSLESEGYSPDAEVGLIFVDDNYIRSLNAEYRGIDKATDVLSFALNEGEEMPE
EEEAEDLLGDIVISLPTAQRQAAEYGHSFNREVAYLTAHGSLHLLGYDHMTEEDRQVMRQKEEGILERLGINR
>Mature_152_residues
AVLVNNLQEEISVEENLLKLVESVVKVSLESEGYSPDAEVGLIFVDDNYIRSLNAEYRGIDKATDVLSFALNEGEEMPEE
EEAEDLLGDIVISLPTAQRQAAEYGHSFNREVAYLTAHGSLHLLGYDHMTEEDRQVMRQKEEGILERLGINR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Homo sapiens, GI54607072, Length=154, Percent_Identity=32.4675324675325, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1786880, Length=116, Percent_Identity=39.6551724137931, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_DESRM (A4J7D9)

Other databases:

- EMBL:   CP000612
- RefSeq:   YP_001113817.1
- ProteinModelPortal:   A4J7D9
- SMR:   A4J7D9
- STRING:   A4J7D9
- GeneID:   4957557
- GenomeReviews:   CP000612_GR
- KEGG:   drm:Dred_2482
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   ETLAMEK
- PhylomeDB:   A4J7D9
- ProtClustDB:   PRK00016
- BioCyc:   DRED349161:DRED_2482-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17225; Mature: 17094

Theoretical pI: Translated: 4.03; Mature: 4.03

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVLVNNLQEEISVEENLLKLVESVVKVSLESEGYSPDAEVGLIFVDDNYIRSLNAEYRG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHCCCHHCC
IDKATDVLSFALNEGEEMPEEEEAEDLLGDIVISLPTAQRQAAEYGHSFNREVAYLTAHG
CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEECC
SLHLLGYDHMTEEDRQVMRQKEEGILERLGINR
CEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AVLVNNLQEEISVEENLLKLVESVVKVSLESEGYSPDAEVGLIFVDDNYIRSLNAEYRG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHCCCHHCC
IDKATDVLSFALNEGEEMPEEEEAEDLLGDIVISLPTAQRQAAEYGHSFNREVAYLTAHG
CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEECC
SLHLLGYDHMTEEDRQVMRQKEEGILERLGINR
CEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA