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The map label for this gene is whiG [H]

Identifier: 134300227

GI number: 134300227

Start: 2610194

End: 2610949

Strand: Reverse

Name: whiG [H]

Synonym: Dred_2388

Alternate gene names: 134300227

Gene position: 2610949-2610194 (Counterclockwise)

Preceding gene: 134300228

Following gene: 134300226

Centisome position: 72.36

GC content: 44.31

Gene sequence:

>756_bases
ATGTCGATTGATCTCTTATGGGAAAAATACATAACGCTTCGTGATCCGGAAGCCAGGCAGAAAATAATCCTGCTTCATTT
ACCTCTGGTTAAACATCTGGCAGGAAGAGTTGCGGTAAAATTACCTTCCTTCATCCTAAGAGAGGATCTGGAAAGTTACG
GTGTGATCGGGTTAATGGAGGCCCTTGATAAGTACGATCCGGCCATGGGGCACAGCTTCGATTCCTATGCCTACCACCGT
ATTAGGGGAGCCATGTTGGATGAAGTGCGACGTCAAAATTGGCTGCCCAGAACAGCCTGGCAAAAGAATCAACTTTTAAA
AAACACCCGGGAGCGTTTAGAAAGGGAACAGGGTGAAGTAATTACTAACGAGGTATTGGCCAAAGAGATGGGAATACCTG
TTGAAGAGGTTCGTCAACTAATCTTTAATGCCAATAAAATGTATATCCAGTCCTTGGATGAAGAGGTAGCCGGTCATGAT
GGCAGCCAAATGAGCAAGCTGGAATTATTGGAGGATACCAATAGCCCAGATCCCTTAAGCATCGTAGAAGAAAAGGAAAG
CAAAAGACTGCTGGCGGAGGCCATAGAGACACTGTCTGAACGGGAGAAGCTAATCTTAGCTCTCTACTACAGTGAGGGGC
TAACCCTTAAGGAGATAGGACAGGTATTAGAAGTTTCCGAATCCAGAGTTTGTCAACTTCATTCCCAGGTGATGAAAAGA
TTAAAGAAAACCCTGGAAAGTATGTTAAATAGTTAG

Upstream 100 bases:

>100_bases
GTTTACCGATATTCGACCCCAGCAGCAAGATATGATTATGGCCTTTGTGTTTGAACGGATGATTCAAATAAAACGCAGGC
AGTAATTGGATGTGGAAAGC

Downstream 100 bases:

>100_bases
TTGGAGGTAAGCAATGCTGCGAGGATTATATATCACCATGAACAGCCTGAATGTCCAACAGGCGAAATTAAATAATGTTA
CCAATAACCTGTCGAACCTC

Product: FliA/WhiG family RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MSIDLLWEKYITLRDPEARQKIILLHLPLVKHLAGRVAVKLPSFILREDLESYGVIGLMEALDKYDPAMGHSFDSYAYHR
IRGAMLDEVRRQNWLPRTAWQKNQLLKNTRERLEREQGEVITNEVLAKEMGIPVEEVRQLIFNANKMYIQSLDEEVAGHD
GSQMSKLELLEDTNSPDPLSIVEEKESKRLLAEAIETLSEREKLILALYYSEGLTLKEIGQVLEVSESRVCQLHSQVMKR
LKKTLESMLNS

Sequences:

>Translated_251_residues
MSIDLLWEKYITLRDPEARQKIILLHLPLVKHLAGRVAVKLPSFILREDLESYGVIGLMEALDKYDPAMGHSFDSYAYHR
IRGAMLDEVRRQNWLPRTAWQKNQLLKNTRERLEREQGEVITNEVLAKEMGIPVEEVRQLIFNANKMYIQSLDEEVAGHD
GSQMSKLELLEDTNSPDPLSIVEEKESKRLLAEAIETLSEREKLILALYYSEGLTLKEIGQVLEVSESRVCQLHSQVMKR
LKKTLESMLNS
>Mature_250_residues
SIDLLWEKYITLRDPEARQKIILLHLPLVKHLAGRVAVKLPSFILREDLESYGVIGLMEALDKYDPAMGHSFDSYAYHRI
RGAMLDEVRRQNWLPRTAWQKNQLLKNTRERLEREQGEVITNEVLAKEMGIPVEEVRQLIFNANKMYIQSLDEEVAGHDG
SQMSKLELLEDTNSPDPLSIVEEKESKRLLAEAIETLSEREKLILALYYSEGLTLKEIGQVLEVSESRVCQLHSQVMKRL
KKTLESMLNS

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=221, Percent_Identity=42.9864253393665, Blast_Score=167, Evalue=5e-43,
Organism=Escherichia coli, GI1789871, Length=250, Percent_Identity=31.2, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789448, Length=233, Percent_Identity=24.8927038626609, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789098, Length=245, Percent_Identity=25.3061224489796, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 28987; Mature: 28856

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIDLLWEKYITLRDPEARQKIILLHLPLVKHLAGRVAVKLPSFILREDLESYGVIGLME
CCHHHHHHHHHHCCCCHHHHHEEHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALDKYDPAMGHSFDSYAYHRIRGAMLDEVRRQNWLPRTAWQKNQLLKNTRERLEREQGEV
HHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHH
ITNEVLAKEMGIPVEEVRQLIFNANKMYIQSLDEEVAGHDGSQMSKLELLEDTNSPDPLS
HHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHH
IVEEKESKRLLAEAIETLSEREKLILALYYSEGLTLKEIGQVLEVSESRVCQLHSQVMKR
HHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LKKTLESMLNS
HHHHHHHHHCC
>Mature Secondary Structure 
SIDLLWEKYITLRDPEARQKIILLHLPLVKHLAGRVAVKLPSFILREDLESYGVIGLME
CHHHHHHHHHHCCCCHHHHHEEHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALDKYDPAMGHSFDSYAYHRIRGAMLDEVRRQNWLPRTAWQKNQLLKNTRERLEREQGEV
HHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHH
ITNEVLAKEMGIPVEEVRQLIFNANKMYIQSLDEEVAGHDGSQMSKLELLEDTNSPDPLS
HHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHH
IVEEKESKRLLAEAIETLSEREKLILALYYSEGLTLKEIGQVLEVSESRVCQLHSQVMKR
HHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LKKTLESMLNS
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]