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The map label for this gene is yecS [H]

Identifier: 134300076

GI number: 134300076

Start: 2443201

End: 2443968

Strand: Reverse

Name: yecS [H]

Synonym: Dred_2234

Alternate gene names: 134300076

Gene position: 2443968-2443201 (Counterclockwise)

Preceding gene: 134300077

Following gene: 134300075

Centisome position: 67.74

GC content: 33.46

Gene sequence:

>768_bases
ATGACCTTTGAGTGGATAGTAAAAATTATTTCAGACTACGGTCCAATGTTCATTCGTGGTGCTGGTGTGACACTCTTAAT
TTCTATCATTGGTACTATTGTGGGTTTTATCATCGGTTTATTAGTAGGAATTATACGTACTATTCCAATGCCTGAACGCG
GTGGCAAAAGAGTCACTATTAAAATTATTAATGCAATCTTATCTGCTTATATAGAATTCTTCCGTGGCACACCAATGATT
GTACAAGCCATGGTAATTTATTATGGTTCCGCTTTAGCATTTGGCGTGGATATGAATCGGTTAGTTGCAGCAATCTTTAT
CGTATCTATTAATACAGGGGCGTACATGTCAGAAATTGTTCGTGGTGGTATTATTTCTATCGATAAAGGACAATTTGAAG
CAGCTCATGCAATAGGTATGAATCACGTTCAAACGATGTTTAATGTTATAATACCACAAGTAATTCGTAATATTTTACCA
GCAACAGGCAATGAATTTATTATCAATATCAAAGATACCTCTGTACTTAACGTAATATCTGTAACGGAATTATTTTTCCA
AACAAAATCAGTTGCAGGAAACAACTTCAGGTATTTTGAATCATTCTTTGTTGCCTGTATTATTTATTTTATCATGACCT
ATACAGTAACAAGAATTTTACGTTATTTTGAAAGGAAATTAGATGGTCCAGATGATTACATTTTGTGTGGTAATCAAATG
CAATTAGAAAGACCTGAAGATATGCTGCGTAAGACAAAAAATAATTAG

Upstream 100 bases:

>100_bases
AGTGCCATCAAGAATCAACCGGCAGCTAAATAACAATAATTTAAAACCGGGTGCATTCAAAATGCACCCGGTTTTATAAC
GTTATTAAAGGAGGAGAAAG

Downstream 100 bases:

>100_bases
ACGAAGGAGGAGAGAAAATATGGAAAAAGTAATTGATATTCAGCATTTAAGCAAATCCTTTGGAACCCATGAAGTATTAA
AAGACATTAATTTTTCGGTT

Product: polar amino acid ABC transporter, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MTFEWIVKIISDYGPMFIRGAGVTLLISIIGTIVGFIIGLLVGIIRTIPMPERGGKRVTIKIINAILSAYIEFFRGTPMI
VQAMVIYYGSALAFGVDMNRLVAAIFIVSINTGAYMSEIVRGGIISIDKGQFEAAHAIGMNHVQTMFNVIIPQVIRNILP
ATGNEFIINIKDTSVLNVISVTELFFQTKSVAGNNFRYFESFFVACIIYFIMTYTVTRILRYFERKLDGPDDYILCGNQM
QLERPEDMLRKTKNN

Sequences:

>Translated_255_residues
MTFEWIVKIISDYGPMFIRGAGVTLLISIIGTIVGFIIGLLVGIIRTIPMPERGGKRVTIKIINAILSAYIEFFRGTPMI
VQAMVIYYGSALAFGVDMNRLVAAIFIVSINTGAYMSEIVRGGIISIDKGQFEAAHAIGMNHVQTMFNVIIPQVIRNILP
ATGNEFIINIKDTSVLNVISVTELFFQTKSVAGNNFRYFESFFVACIIYFIMTYTVTRILRYFERKLDGPDDYILCGNQM
QLERPEDMLRKTKNN
>Mature_254_residues
TFEWIVKIISDYGPMFIRGAGVTLLISIIGTIVGFIIGLLVGIIRTIPMPERGGKRVTIKIINAILSAYIEFFRGTPMIV
QAMVIYYGSALAFGVDMNRLVAAIFIVSINTGAYMSEIVRGGIISIDKGQFEAAHAIGMNHVQTMFNVIIPQVIRNILPA
TGNEFIINIKDTSVLNVISVTELFFQTKSVAGNNFRYFESFFVACIIYFIMTYTVTRILRYFERKLDGPDDYILCGNQMQ
LERPEDMLRKTKNN

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=223, Percent_Identity=37.6681614349776, Blast_Score=157, Evalue=9e-40,
Organism=Escherichia coli, GI1787030, Length=229, Percent_Identity=39.7379912663755, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1787087, Length=240, Percent_Identity=27.9166666666667, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082239, Length=217, Percent_Identity=28.5714285714286, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786873, Length=222, Percent_Identity=26.5765765765766, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787086, Length=224, Percent_Identity=25.8928571428571, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788646, Length=219, Percent_Identity=26.4840182648402, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788645, Length=216, Percent_Identity=26.8518518518519, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1786874, Length=225, Percent_Identity=24.8888888888889, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI48994930, Length=166, Percent_Identity=25.3012048192771, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28652; Mature: 28521

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFEWIVKIISDYGPMFIRGAGVTLLISIIGTIVGFIIGLLVGIIRTIPMPERGGKRVTI
CCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHH
KIINAILSAYIEFFRGTPMIVQAMVIYYGSALAFGVDMNRLVAAIFIVSINTGAYMSEIV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH
RGGIISIDKGQFEAAHAIGMNHVQTMFNVIIPQVIRNILPATGNEFIINIKDTSVLNVIS
CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHH
VTELFFQTKSVAGNNFRYFESFFVACIIYFIMTYTVTRILRYFERKLDGPDDYILCGNQM
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
QLERPEDMLRKTKNN
CCCCCHHHHHHCCCC
>Mature Secondary Structure 
TFEWIVKIISDYGPMFIRGAGVTLLISIIGTIVGFIIGLLVGIIRTIPMPERGGKRVTI
CHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHH
KIINAILSAYIEFFRGTPMIVQAMVIYYGSALAFGVDMNRLVAAIFIVSINTGAYMSEIV
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH
RGGIISIDKGQFEAAHAIGMNHVQTMFNVIIPQVIRNILPATGNEFIINIKDTSVLNVIS
CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHH
VTELFFQTKSVAGNNFRYFESFFVACIIYFIMTYTVTRILRYFERKLDGPDDYILCGNQM
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
QLERPEDMLRKTKNN
CCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]