Definition Desulfotomaculum reducens MI-1 chromosome, complete genome.
Accession NC_009253
Length 3,608,104

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The map label for this gene is 134299855

Identifier: 134299855

GI number: 134299855

Start: 2209215

End: 2210615

Strand: Reverse

Name: 134299855

Synonym: Dred_2009

Alternate gene names: NA

Gene position: 2210615-2209215 (Counterclockwise)

Preceding gene: 134299857

Following gene: 134299854

Centisome position: 61.27

GC content: 41.61

Gene sequence:

>1401_bases
ATGAACATAAGACTTGTAATGGCAGTTTTAGCGGCCAAGTTTGCCGGCTTTGTTAGTCGCAAATTGGGTTGGAAAGGATC
TTCGCTGCCCGGTGTAGTGGCAAGGAAAATCTACAAAGATACATTAGGAGATTTGGCTGGACAAGCTCGCAAGGGTGTTA
TAATGGTTACTGGCACAAATGGAAAGACCACAACTAATAATATGATTGCCAATGTTATTCAGAACGGGGGATACAAGGTG
GTCCTAAACCAGGAGGGTGCTAATTTAATAACAGGTGTAACGGCCGCCTTTATTAAATACGCTGATTGGTTGGGACGGGT
TGATTGTGACTATGCCTTGTTAGAAGTGGATGAAGCATCCTTTCCAAAGGTAGTTAAAGAAGTAAAACCGCAGATTGTTG
TAGTAAACAATTTCTTTCGAGACCAGCTAGATCGTTACGGAGAACTGGATACAACTGTAAAAATGGTCAAGGAAGCTTTA
AAAAGCCTCCTTGATGTACAATTAGTTTTAAATACAGACGATCCATTAGTTGCTCAAATGAAAGAAGCCACAGGACATAA
TGCCAGTTTTTTTGGGTTAGCACCAAACCAGCGTACGGGAAACGGAGCAAAGCAAACCAGAGAATCTAGGTTTTGCCCCC
ATTGTGGGAATGAACTATACTATCTTTCCTTTCAGTATAGCCAACTGGGTTCCTATGCCTGTGCTCAATGTGGATTTAAA
CGGGAAGACCCGGAGATTGAGGCATCCGATGTAATAAACCAGGGGATTGCCCTGCAATGTCGTATTCGCTACCCTGGTGG
TGAAACAAAATTAGCCATTCATACACAAGGGTTTTACAACCTTTATAATGCACTGGCTGCTTTTACAGTGGGATATCTGG
TGGGAATTGACAATGAACAGATTTTACAAGGACTTCTTAAATACAAACCCGCCATTGGAAGAATGGAAACTTTTAATTAT
AAAGGAAAGAGTGCCATATTAAATCTAGTTAAAAATCCCACGGGTTATAATGAGGGGATTACTACCCTCATGAGTCTGCA
TGGATCTAAAAATGTGTTTATGGCAGTAAACGATAACGATGCAGACGGTAGGGATATATCTTGGCTCTGGGATGTGGATT
TTGAACATTTGGCCCAAGGGCATCAGAGTATTGAAACCTTTACCTGTTCAGGATTACGGGGTGAAGAAATGGCCCTGCGT
TTAAAATATGCTGGAGTTCCCGTGGAGAAAATTACTGTAATTCAAGAAATGGATGCCGCCATTCTAAAAGCACTAGAAGA
TCCCGGAGAAAGTATTTACCTTTTTTCTACTTATACAGCCCTCTGGCCTGCCCAGAGAATATTGTTGGGGTTGGCAGAAA
AGGAGGAACTAAATGTTAAAGGTTTGTCATCTATATCCTGA

Upstream 100 bases:

>100_bases
TCTATGTAAACATATCGTAAGAATCAATAGATTACAAGATGAGTTTACCTTAACTTGGAAAGGGATAAAATAAAAATTAG
AAAAACGGTGGGTTGCTTAT

Downstream 100 bases:

>100_bases
TTTACTAAATTTATATGGTGACAGGGGAAATGTAATTGCCTTTGTTCAGCGCTGTTGTTGGCGAAAAATCCCCGTTGAAC
TTATAGAAGTTAATGTAGGG

Product: hypothetical protein

Products: NA

Alternate protein names: Mur Ligase Family Protein; UDP-N-Acetylmuramyl Tripeptide Synthetase; Ligase; Mur Ligase; Mur Ligase Middle Domain Protein; UDP-N-Acetylmuramoylalanine-D-Glutamate Ligase; Conserved Domain Protein; UDP-N-Acetylmuramyl Tripeptide Synthase-Like Protein; Cell Wall Biosynthesis Protein Mur Ligase Family; UDP-N-Acetylmuramyl Tripeptide Synthetase MurC; UDP-N-Acetylmuramyl Tripeptide Synthetase Related Protein; Peptide Ligase; UDP-N-Acetylmuramate-Alanine Ligase; UDP-N-Acetylmuramyl Tripeptide Synthetase Like; Mur Ligase Middle Domain-Containing Protein; Murein Ligase; UDP-N-Acetylmuramoyl-L-Alanyl-D-Glutamate-Lysine Ligase; Udp-N-Acetylmuramyl Tripeptide Synthetase; UDP-N-Acetylmuramyl Peptide Synthetase

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MNIRLVMAVLAAKFAGFVSRKLGWKGSSLPGVVARKIYKDTLGDLAGQARKGVIMVTGTNGKTTTNNMIANVIQNGGYKV
VLNQEGANLITGVTAAFIKYADWLGRVDCDYALLEVDEASFPKVVKEVKPQIVVVNNFFRDQLDRYGELDTTVKMVKEAL
KSLLDVQLVLNTDDPLVAQMKEATGHNASFFGLAPNQRTGNGAKQTRESRFCPHCGNELYYLSFQYSQLGSYACAQCGFK
REDPEIEASDVINQGIALQCRIRYPGGETKLAIHTQGFYNLYNALAAFTVGYLVGIDNEQILQGLLKYKPAIGRMETFNY
KGKSAILNLVKNPTGYNEGITTLMSLHGSKNVFMAVNDNDADGRDISWLWDVDFEHLAQGHQSIETFTCSGLRGEEMALR
LKYAGVPVEKITVIQEMDAAILKALEDPGESIYLFSTYTALWPAQRILLGLAEKEELNVKGLSSIS

Sequences:

>Translated_466_residues
MNIRLVMAVLAAKFAGFVSRKLGWKGSSLPGVVARKIYKDTLGDLAGQARKGVIMVTGTNGKTTTNNMIANVIQNGGYKV
VLNQEGANLITGVTAAFIKYADWLGRVDCDYALLEVDEASFPKVVKEVKPQIVVVNNFFRDQLDRYGELDTTVKMVKEAL
KSLLDVQLVLNTDDPLVAQMKEATGHNASFFGLAPNQRTGNGAKQTRESRFCPHCGNELYYLSFQYSQLGSYACAQCGFK
REDPEIEASDVINQGIALQCRIRYPGGETKLAIHTQGFYNLYNALAAFTVGYLVGIDNEQILQGLLKYKPAIGRMETFNY
KGKSAILNLVKNPTGYNEGITTLMSLHGSKNVFMAVNDNDADGRDISWLWDVDFEHLAQGHQSIETFTCSGLRGEEMALR
LKYAGVPVEKITVIQEMDAAILKALEDPGESIYLFSTYTALWPAQRILLGLAEKEELNVKGLSSIS
>Mature_466_residues
MNIRLVMAVLAAKFAGFVSRKLGWKGSSLPGVVARKIYKDTLGDLAGQARKGVIMVTGTNGKTTTNNMIANVIQNGGYKV
VLNQEGANLITGVTAAFIKYADWLGRVDCDYALLEVDEASFPKVVKEVKPQIVVVNNFFRDQLDRYGELDTTVKMVKEAL
KSLLDVQLVLNTDDPLVAQMKEATGHNASFFGLAPNQRTGNGAKQTRESRFCPHCGNELYYLSFQYSQLGSYACAQCGFK
REDPEIEASDVINQGIALQCRIRYPGGETKLAIHTQGFYNLYNALAAFTVGYLVGIDNEQILQGLLKYKPAIGRMETFNY
KGKSAILNLVKNPTGYNEGITTLMSLHGSKNVFMAVNDNDADGRDISWLWDVDFEHLAQGHQSIETFTCSGLRGEEMALR
LKYAGVPVEKITVIQEMDAAILKALEDPGESIYLFSTYTALWPAQRILLGLAEKEELNVKGLSSIS

Specific function: Unknown

COG id: COG0769

COG function: function code M; UDP-N-acetylmuramyl tripeptide synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51322; Mature: 51322

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS01011 FOLYLPOLYGLU_SYNT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRLVMAVLAAKFAGFVSRKLGWKGSSLPGVVARKIYKDTLGDLAGQARKGVIMVTGTN
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCC
GKTTTNNMIANVIQNGGYKVVLNQEGANLITGVTAAFIKYADWLGRVDCDYALLEVDEAS
CCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
FPKVVKEVKPQIVVVNNFFRDQLDRYGELDTTVKMVKEALKSLLDVQLVLNTDDPLVAQM
HHHHHHHCCCCEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHH
KEATGHNASFFGLAPNQRTGNGAKQTRESRFCPHCGNELYYLSFQYSQLGSYACAQCGFK
HHHCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCCEEEEEEEEHHHHCCHHHHHCCCC
REDPEIEASDVINQGIALQCRIRYPGGETKLAIHTQGFYNLYNALAAFTVGYLVGIDNEQ
CCCCCCCHHHHHCCCCEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHEECCHHH
ILQGLLKYKPAIGRMETFNYKGKSAILNLVKNPTGYNEGITTLMSLHGSKNVFMAVNDND
HHHHHHHHCCCCCCCEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEECCCC
ADGRDISWLWDVDFEHLAQGHQSIETFTCSGLRGEEMALRLKYAGVPVEKITVIQEMDAA
CCCCEEEEEECCCHHHHHCHHHHHHHEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
ILKALEDPGESIYLFSTYTALWPAQRILLGLAEKEELNVKGLSSIS
HHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNIRLVMAVLAAKFAGFVSRKLGWKGSSLPGVVARKIYKDTLGDLAGQARKGVIMVTGTN
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCC
GKTTTNNMIANVIQNGGYKVVLNQEGANLITGVTAAFIKYADWLGRVDCDYALLEVDEAS
CCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
FPKVVKEVKPQIVVVNNFFRDQLDRYGELDTTVKMVKEALKSLLDVQLVLNTDDPLVAQM
HHHHHHHCCCCEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHH
KEATGHNASFFGLAPNQRTGNGAKQTRESRFCPHCGNELYYLSFQYSQLGSYACAQCGFK
HHHCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCCEEEEEEEEHHHHCCHHHHHCCCC
REDPEIEASDVINQGIALQCRIRYPGGETKLAIHTQGFYNLYNALAAFTVGYLVGIDNEQ
CCCCCCCHHHHHCCCCEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHEECCHHH
ILQGLLKYKPAIGRMETFNYKGKSAILNLVKNPTGYNEGITTLMSLHGSKNVFMAVNDND
HHHHHHHHCCCCCCCEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEECCCC
ADGRDISWLWDVDFEHLAQGHQSIETFTCSGLRGEEMALRLKYAGVPVEKITVIQEMDAA
CCCCEEEEEECCCHHHHHCHHHHHHHEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
ILKALEDPGESIYLFSTYTALWPAQRILLGLAEKEELNVKGLSSIS
HHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA