| Definition | Desulfotomaculum reducens MI-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009253 |
| Length | 3,608,104 |
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The map label for this gene is 134299855
Identifier: 134299855
GI number: 134299855
Start: 2209215
End: 2210615
Strand: Reverse
Name: 134299855
Synonym: Dred_2009
Alternate gene names: NA
Gene position: 2210615-2209215 (Counterclockwise)
Preceding gene: 134299857
Following gene: 134299854
Centisome position: 61.27
GC content: 41.61
Gene sequence:
>1401_bases ATGAACATAAGACTTGTAATGGCAGTTTTAGCGGCCAAGTTTGCCGGCTTTGTTAGTCGCAAATTGGGTTGGAAAGGATC TTCGCTGCCCGGTGTAGTGGCAAGGAAAATCTACAAAGATACATTAGGAGATTTGGCTGGACAAGCTCGCAAGGGTGTTA TAATGGTTACTGGCACAAATGGAAAGACCACAACTAATAATATGATTGCCAATGTTATTCAGAACGGGGGATACAAGGTG GTCCTAAACCAGGAGGGTGCTAATTTAATAACAGGTGTAACGGCCGCCTTTATTAAATACGCTGATTGGTTGGGACGGGT TGATTGTGACTATGCCTTGTTAGAAGTGGATGAAGCATCCTTTCCAAAGGTAGTTAAAGAAGTAAAACCGCAGATTGTTG TAGTAAACAATTTCTTTCGAGACCAGCTAGATCGTTACGGAGAACTGGATACAACTGTAAAAATGGTCAAGGAAGCTTTA AAAAGCCTCCTTGATGTACAATTAGTTTTAAATACAGACGATCCATTAGTTGCTCAAATGAAAGAAGCCACAGGACATAA TGCCAGTTTTTTTGGGTTAGCACCAAACCAGCGTACGGGAAACGGAGCAAAGCAAACCAGAGAATCTAGGTTTTGCCCCC ATTGTGGGAATGAACTATACTATCTTTCCTTTCAGTATAGCCAACTGGGTTCCTATGCCTGTGCTCAATGTGGATTTAAA CGGGAAGACCCGGAGATTGAGGCATCCGATGTAATAAACCAGGGGATTGCCCTGCAATGTCGTATTCGCTACCCTGGTGG TGAAACAAAATTAGCCATTCATACACAAGGGTTTTACAACCTTTATAATGCACTGGCTGCTTTTACAGTGGGATATCTGG TGGGAATTGACAATGAACAGATTTTACAAGGACTTCTTAAATACAAACCCGCCATTGGAAGAATGGAAACTTTTAATTAT AAAGGAAAGAGTGCCATATTAAATCTAGTTAAAAATCCCACGGGTTATAATGAGGGGATTACTACCCTCATGAGTCTGCA TGGATCTAAAAATGTGTTTATGGCAGTAAACGATAACGATGCAGACGGTAGGGATATATCTTGGCTCTGGGATGTGGATT TTGAACATTTGGCCCAAGGGCATCAGAGTATTGAAACCTTTACCTGTTCAGGATTACGGGGTGAAGAAATGGCCCTGCGT TTAAAATATGCTGGAGTTCCCGTGGAGAAAATTACTGTAATTCAAGAAATGGATGCCGCCATTCTAAAAGCACTAGAAGA TCCCGGAGAAAGTATTTACCTTTTTTCTACTTATACAGCCCTCTGGCCTGCCCAGAGAATATTGTTGGGGTTGGCAGAAA AGGAGGAACTAAATGTTAAAGGTTTGTCATCTATATCCTGA
Upstream 100 bases:
>100_bases TCTATGTAAACATATCGTAAGAATCAATAGATTACAAGATGAGTTTACCTTAACTTGGAAAGGGATAAAATAAAAATTAG AAAAACGGTGGGTTGCTTAT
Downstream 100 bases:
>100_bases TTTACTAAATTTATATGGTGACAGGGGAAATGTAATTGCCTTTGTTCAGCGCTGTTGTTGGCGAAAAATCCCCGTTGAAC TTATAGAAGTTAATGTAGGG
Product: hypothetical protein
Products: NA
Alternate protein names: Mur Ligase Family Protein; UDP-N-Acetylmuramyl Tripeptide Synthetase; Ligase; Mur Ligase; Mur Ligase Middle Domain Protein; UDP-N-Acetylmuramoylalanine-D-Glutamate Ligase; Conserved Domain Protein; UDP-N-Acetylmuramyl Tripeptide Synthase-Like Protein; Cell Wall Biosynthesis Protein Mur Ligase Family; UDP-N-Acetylmuramyl Tripeptide Synthetase MurC; UDP-N-Acetylmuramyl Tripeptide Synthetase Related Protein; Peptide Ligase; UDP-N-Acetylmuramate-Alanine Ligase; UDP-N-Acetylmuramyl Tripeptide Synthetase Like; Mur Ligase Middle Domain-Containing Protein; Murein Ligase; UDP-N-Acetylmuramoyl-L-Alanyl-D-Glutamate-Lysine Ligase; Udp-N-Acetylmuramyl Tripeptide Synthetase; UDP-N-Acetylmuramyl Peptide Synthetase
Number of amino acids: Translated: 466; Mature: 466
Protein sequence:
>466_residues MNIRLVMAVLAAKFAGFVSRKLGWKGSSLPGVVARKIYKDTLGDLAGQARKGVIMVTGTNGKTTTNNMIANVIQNGGYKV VLNQEGANLITGVTAAFIKYADWLGRVDCDYALLEVDEASFPKVVKEVKPQIVVVNNFFRDQLDRYGELDTTVKMVKEAL KSLLDVQLVLNTDDPLVAQMKEATGHNASFFGLAPNQRTGNGAKQTRESRFCPHCGNELYYLSFQYSQLGSYACAQCGFK REDPEIEASDVINQGIALQCRIRYPGGETKLAIHTQGFYNLYNALAAFTVGYLVGIDNEQILQGLLKYKPAIGRMETFNY KGKSAILNLVKNPTGYNEGITTLMSLHGSKNVFMAVNDNDADGRDISWLWDVDFEHLAQGHQSIETFTCSGLRGEEMALR LKYAGVPVEKITVIQEMDAAILKALEDPGESIYLFSTYTALWPAQRILLGLAEKEELNVKGLSSIS
Sequences:
>Translated_466_residues MNIRLVMAVLAAKFAGFVSRKLGWKGSSLPGVVARKIYKDTLGDLAGQARKGVIMVTGTNGKTTTNNMIANVIQNGGYKV VLNQEGANLITGVTAAFIKYADWLGRVDCDYALLEVDEASFPKVVKEVKPQIVVVNNFFRDQLDRYGELDTTVKMVKEAL KSLLDVQLVLNTDDPLVAQMKEATGHNASFFGLAPNQRTGNGAKQTRESRFCPHCGNELYYLSFQYSQLGSYACAQCGFK REDPEIEASDVINQGIALQCRIRYPGGETKLAIHTQGFYNLYNALAAFTVGYLVGIDNEQILQGLLKYKPAIGRMETFNY KGKSAILNLVKNPTGYNEGITTLMSLHGSKNVFMAVNDNDADGRDISWLWDVDFEHLAQGHQSIETFTCSGLRGEEMALR LKYAGVPVEKITVIQEMDAAILKALEDPGESIYLFSTYTALWPAQRILLGLAEKEELNVKGLSSIS >Mature_466_residues MNIRLVMAVLAAKFAGFVSRKLGWKGSSLPGVVARKIYKDTLGDLAGQARKGVIMVTGTNGKTTTNNMIANVIQNGGYKV VLNQEGANLITGVTAAFIKYADWLGRVDCDYALLEVDEASFPKVVKEVKPQIVVVNNFFRDQLDRYGELDTTVKMVKEAL KSLLDVQLVLNTDDPLVAQMKEATGHNASFFGLAPNQRTGNGAKQTRESRFCPHCGNELYYLSFQYSQLGSYACAQCGFK REDPEIEASDVINQGIALQCRIRYPGGETKLAIHTQGFYNLYNALAAFTVGYLVGIDNEQILQGLLKYKPAIGRMETFNY KGKSAILNLVKNPTGYNEGITTLMSLHGSKNVFMAVNDNDADGRDISWLWDVDFEHLAQGHQSIETFTCSGLRGEEMALR LKYAGVPVEKITVIQEMDAAILKALEDPGESIYLFSTYTALWPAQRILLGLAEKEELNVKGLSSIS
Specific function: Unknown
COG id: COG0769
COG function: function code M; UDP-N-acetylmuramyl tripeptide synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51322; Mature: 51322
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: PS01011 FOLYLPOLYGLU_SYNT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIRLVMAVLAAKFAGFVSRKLGWKGSSLPGVVARKIYKDTLGDLAGQARKGVIMVTGTN CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCC GKTTTNNMIANVIQNGGYKVVLNQEGANLITGVTAAFIKYADWLGRVDCDYALLEVDEAS CCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC FPKVVKEVKPQIVVVNNFFRDQLDRYGELDTTVKMVKEALKSLLDVQLVLNTDDPLVAQM HHHHHHHCCCCEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHH KEATGHNASFFGLAPNQRTGNGAKQTRESRFCPHCGNELYYLSFQYSQLGSYACAQCGFK HHHCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCCEEEEEEEEHHHHCCHHHHHCCCC REDPEIEASDVINQGIALQCRIRYPGGETKLAIHTQGFYNLYNALAAFTVGYLVGIDNEQ CCCCCCCHHHHHCCCCEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHEECCHHH ILQGLLKYKPAIGRMETFNYKGKSAILNLVKNPTGYNEGITTLMSLHGSKNVFMAVNDND HHHHHHHHCCCCCCCEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEECCCC ADGRDISWLWDVDFEHLAQGHQSIETFTCSGLRGEEMALRLKYAGVPVEKITVIQEMDAA CCCCEEEEEECCCHHHHHCHHHHHHHEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHH ILKALEDPGESIYLFSTYTALWPAQRILLGLAEKEELNVKGLSSIS HHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MNIRLVMAVLAAKFAGFVSRKLGWKGSSLPGVVARKIYKDTLGDLAGQARKGVIMVTGTN CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCC GKTTTNNMIANVIQNGGYKVVLNQEGANLITGVTAAFIKYADWLGRVDCDYALLEVDEAS CCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC FPKVVKEVKPQIVVVNNFFRDQLDRYGELDTTVKMVKEALKSLLDVQLVLNTDDPLVAQM HHHHHHHCCCCEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHH KEATGHNASFFGLAPNQRTGNGAKQTRESRFCPHCGNELYYLSFQYSQLGSYACAQCGFK HHHCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCCEEEEEEEEHHHHCCHHHHHCCCC REDPEIEASDVINQGIALQCRIRYPGGETKLAIHTQGFYNLYNALAAFTVGYLVGIDNEQ CCCCCCCHHHHHCCCCEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHEECCHHH ILQGLLKYKPAIGRMETFNYKGKSAILNLVKNPTGYNEGITTLMSLHGSKNVFMAVNDND HHHHHHHHCCCCCCCEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEECCCC ADGRDISWLWDVDFEHLAQGHQSIETFTCSGLRGEEMALRLKYAGVPVEKITVIQEMDAA CCCCEEEEEECCCHHHHHCHHHHHHHEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHH ILKALEDPGESIYLFSTYTALWPAQRILLGLAEKEELNVKGLSSIS HHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA