| Definition | Desulfotomaculum reducens MI-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009253 |
| Length | 3,608,104 |
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The map label for this gene is ybbL [H]
Identifier: 134299662
GI number: 134299662
Start: 1981852
End: 1982493
Strand: Reverse
Name: ybbL [H]
Synonym: Dred_1808
Alternate gene names: 134299662
Gene position: 1982493-1981852 (Counterclockwise)
Preceding gene: 134299664
Following gene: 134299661
Centisome position: 54.95
GC content: 46.26
Gene sequence:
>642_bases TTGTTATTTGCTTTTGAACATATTTCCTATGATCTCGGCATAGATCCTGTGCGTCATATAAACGTTTCGGGTTCTTTGCA CGAAGGAGAGGTGTTGGTGGTTAGAGGACCCTCGGGGGCAGGAAAATCAACACTAATGAGAATTCTGGCCAAACTACAAA CAAACAAAGGTGGCAGAGTCCATCTCCGGGGAGAAAGCTGGGACCATATTCCGCCACCGTACTGGCGCTGCCAGGTGCAC TATCTTGCACAGAAAACAGTTCTCTTTGATGGAACAATAGCCAGTAATCTGGCAAGGCCCTTTGAAATAAGAATACATAG TGATAAAGTTTTTAAAATCAAGCTGGCGCAGGACCTCATGGAACAGTTGCTTTTGCCCCCTGCCCTTTGGGAACAAGATG CCAAAACACTATCCGGGGGCGAAGCCGCAAGGGTAGCACTGATTAGAGCCATGCTGATTGATCCTGCCATCTTACTGCTG GACGAACCCACTGCGGCCCTGGATGATCAAGCCAGAGAGGTATTTTACTCATTGTTAAAAAAATGGTTAAAGACTCCCGG GCGTGCTGCTATGCTGATCTCTCACAATCATGATTACCAGACTCTAGATTGGGTTTCTTTTTTGGATATAGTTCCTAGTT AG
Upstream 100 bases:
>100_bases TTGTTATAGAAGTTCTGCTTAATTTATGTTAGATTGAGAAAGTCAAGGATAAAGAGACTGTATTTTGAGGGGTTAAAGAT ATTTAAGAGGGGAGATTGTA
Downstream 100 bases:
>100_bases GAGGTTTTTATGGACAATTCAACCATTCCCATTTCTAATTTACAATTGGCTTTTTCTGTTGTTCTGATTATGATAACCGG GGGGATCGCTTCCTTTCTTA
Product: ABC transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 213; Mature: 213
Protein sequence:
>213_residues MLFAFEHISYDLGIDPVRHINVSGSLHEGEVLVVRGPSGAGKSTLMRILAKLQTNKGGRVHLRGESWDHIPPPYWRCQVH YLAQKTVLFDGTIASNLARPFEIRIHSDKVFKIKLAQDLMEQLLLPPALWEQDAKTLSGGEAARVALIRAMLIDPAILLL DEPTAALDDQAREVFYSLLKKWLKTPGRAAMLISHNHDYQTLDWVSFLDIVPS
Sequences:
>Translated_213_residues MLFAFEHISYDLGIDPVRHINVSGSLHEGEVLVVRGPSGAGKSTLMRILAKLQTNKGGRVHLRGESWDHIPPPYWRCQVH YLAQKTVLFDGTIASNLARPFEIRIHSDKVFKIKLAQDLMEQLLLPPALWEQDAKTLSGGEAARVALIRAMLIDPAILLL DEPTAALDDQAREVFYSLLKKWLKTPGRAAMLISHNHDYQTLDWVSFLDIVPS >Mature_213_residues MLFAFEHISYDLGIDPVRHINVSGSLHEGEVLVVRGPSGAGKSTLMRILAKLQTNKGGRVHLRGESWDHIPPPYWRCQVH YLAQKTVLFDGTIASNLARPFEIRIHSDKVFKIKLAQDLMEQLLLPPALWEQDAKTLSGGEAARVALIRAMLIDPAILLL DEPTAALDDQAREVFYSLLKKWLKTPGRAAMLISHNHDYQTLDWVSFLDIVPS
Specific function: Unknown
COG id: COG4619
COG function: function code R; ABC-type uncharacterized transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9955963, Length=197, Percent_Identity=30.9644670050761, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI4505771, Length=175, Percent_Identity=32, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI9961252, Length=175, Percent_Identity=32, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI9955968, Length=178, Percent_Identity=34.2696629213483, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI42741659, Length=176, Percent_Identity=31.8181818181818, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI9955966, Length=178, Percent_Identity=34.2696629213483, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI45243524, Length=178, Percent_Identity=34.2696629213483, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI9961250, Length=182, Percent_Identity=30.7692307692308, Blast_Score=81, Evalue=7e-16, Organism=Homo sapiens, GI73747915, Length=199, Percent_Identity=29.1457286432161, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI42490749, Length=171, Percent_Identity=30.9941520467836, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI156105685, Length=199, Percent_Identity=27.1356783919598, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI21536378, Length=179, Percent_Identity=29.608938547486, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI255708477, Length=179, Percent_Identity=30.7262569832402, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI148612844, Length=179, Percent_Identity=30.7262569832402, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI73747917, Length=177, Percent_Identity=29.9435028248588, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI27262624, Length=181, Percent_Identity=32.0441988950276, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI27262626, Length=181, Percent_Identity=32.0441988950276, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI153792144, Length=158, Percent_Identity=33.5443037974684, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI90421313, Length=186, Percent_Identity=29.5698924731183, Blast_Score=68, Evalue=5e-12, Organism=Homo sapiens, GI62526033, Length=232, Percent_Identity=26.7241379310345, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI9665248, Length=190, Percent_Identity=26.8421052631579, Blast_Score=64, Evalue=7e-11, Organism=Escherichia coli, GI1786698, Length=197, Percent_Identity=32.48730964467, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1787712, Length=199, Percent_Identity=31.1557788944724, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI87081791, Length=181, Percent_Identity=32.0441988950276, Blast_Score=84, Evalue=5e-18, Organism=Escherichia coli, GI1788450, Length=199, Percent_Identity=30.1507537688442, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1790467, Length=192, Percent_Identity=31.7708333333333, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1787370, Length=177, Percent_Identity=31.638418079096, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1787089, Length=165, Percent_Identity=33.9393939393939, Blast_Score=80, Evalue=7e-17, Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=30.2884615384615, Blast_Score=80, Evalue=9e-17, Organism=Escherichia coli, GI1787029, Length=198, Percent_Identity=29.7979797979798, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1788053, Length=188, Percent_Identity=34.0425531914894, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789891, Length=182, Percent_Identity=29.1208791208791, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1789873, Length=201, Percent_Identity=29.8507462686567, Blast_Score=74, Evalue=5e-15, Organism=Escherichia coli, GI1788761, Length=185, Percent_Identity=29.1891891891892, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1788165, Length=197, Percent_Identity=30.4568527918782, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1786398, Length=184, Percent_Identity=32.6086956521739, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1786253, Length=173, Percent_Identity=31.7919075144509, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787143, Length=185, Percent_Identity=28.6486486486486, Blast_Score=71, Evalue=4e-14, Organism=Escherichia coli, GI87081834, Length=186, Percent_Identity=30.1075268817204, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1789962, Length=181, Percent_Identity=27.6243093922652, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786653, Length=180, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1787792, Length=190, Percent_Identity=28.4210526315789, Blast_Score=68, Evalue=4e-13, Organism=Escherichia coli, GI1787500, Length=185, Percent_Identity=27.5675675675676, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1786703, Length=173, Percent_Identity=34.6820809248555, Blast_Score=67, Evalue=6e-13, Organism=Escherichia coli, GI1788506, Length=185, Percent_Identity=28.1081081081081, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI87082267, Length=173, Percent_Identity=28.3236994219653, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787112, Length=181, Percent_Identity=28.7292817679558, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI145693107, Length=185, Percent_Identity=29.7297297297297, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787105, Length=193, Percent_Identity=26.9430051813472, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787758, Length=200, Percent_Identity=27.5, Blast_Score=61, Evalue=5e-11, Organism=Escherichia coli, GI1786872, Length=180, Percent_Identity=30.5555555555556, Blast_Score=61, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17567265, Length=173, Percent_Identity=34.1040462427746, Blast_Score=88, Evalue=3e-18, Organism=Caenorhabditis elegans, GI193202349, Length=180, Percent_Identity=33.8888888888889, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI115533592, Length=200, Percent_Identity=31, Blast_Score=83, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17567269, Length=172, Percent_Identity=33.7209302325581, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71984940, Length=193, Percent_Identity=31.6062176165803, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI115534520, Length=216, Percent_Identity=28.2407407407407, Blast_Score=80, Evalue=6e-16, Organism=Caenorhabditis elegans, GI115535101, Length=189, Percent_Identity=29.6296296296296, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17565938, Length=175, Percent_Identity=27.4285714285714, Blast_Score=79, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17541710, Length=173, Percent_Identity=30.635838150289, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193209708, Length=180, Percent_Identity=31.6666666666667, Blast_Score=78, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17543740, Length=188, Percent_Identity=28.7234042553192, Blast_Score=78, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71992290, Length=192, Percent_Identity=27.6041666666667, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI25146777, Length=186, Percent_Identity=30.1075268817204, Blast_Score=77, Evalue=5e-15, Organism=Caenorhabditis elegans, GI71992285, Length=192, Percent_Identity=29.6875, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17533971, Length=198, Percent_Identity=26.2626262626263, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI212646699, Length=162, Percent_Identity=33.9506172839506, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17569143, Length=175, Percent_Identity=29.7142857142857, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71996550, Length=173, Percent_Identity=31.2138728323699, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI71996809, Length=151, Percent_Identity=31.7880794701987, Blast_Score=73, Evalue=8e-14, Organism=Caenorhabditis elegans, GI193211017, Length=156, Percent_Identity=31.4102564102564, Blast_Score=73, Evalue=9e-14, Organism=Caenorhabditis elegans, GI193211015, Length=176, Percent_Identity=30.1136363636364, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17558664, Length=172, Percent_Identity=27.3255813953488, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17569145, Length=179, Percent_Identity=28.4916201117318, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI86563255, Length=195, Percent_Identity=31.7948717948718, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71988343, Length=201, Percent_Identity=30.3482587064677, Blast_Score=71, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6323217, Length=206, Percent_Identity=29.6116504854369, Blast_Score=86, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6322640, Length=184, Percent_Identity=30.4347826086957, Blast_Score=80, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6324498, Length=200, Percent_Identity=30, Blast_Score=65, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6323959, Length=198, Percent_Identity=24.7474747474747, Blast_Score=64, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6319856, Length=180, Percent_Identity=28.3333333333333, Blast_Score=64, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6320296, Length=192, Percent_Identity=26.0416666666667, Blast_Score=63, Evalue=4e-11, Organism=Drosophila melanogaster, GI21357907, Length=195, Percent_Identity=29.7435897435897, Blast_Score=91, Evalue=7e-19, Organism=Drosophila melanogaster, GI24659289, Length=183, Percent_Identity=32.2404371584699, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI23397593, Length=204, Percent_Identity=30.3921568627451, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI24653245, Length=176, Percent_Identity=30.6818181818182, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI281363262, Length=176, Percent_Identity=30.6818181818182, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI85726357, Length=175, Percent_Identity=28, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI17136662, Length=184, Percent_Identity=29.8913043478261, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24641565, Length=212, Percent_Identity=27.3584905660377, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI45550390, Length=175, Percent_Identity=29.1428571428571, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI45552359, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=3e-12, Organism=Drosophila melanogaster, GI45550972, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=3e-12, Organism=Drosophila melanogaster, GI45552341, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI45552347, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI45552361, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI45552355, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI45552345, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI45552337, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI45552335, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI45552363, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI45552351, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI45552349, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI45552357, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI45552353, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI24583969, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI45552343, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI45552339, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24585091, Length=194, Percent_Identity=27.319587628866, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI85724858, Length=200, Percent_Identity=30.5, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI85724856, Length=200, Percent_Identity=30.5, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24580547, Length=200, Percent_Identity=30.5, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24580551, Length=200, Percent_Identity=30.5, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24580549, Length=200, Percent_Identity=30.5, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24580545, Length=200, Percent_Identity=30.5, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI62484234, Length=188, Percent_Identity=27.6595744680851, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 23923; Mature: 23923
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFAFEHISYDLGIDPVRHINVSGSLHEGEVLVVRGPSGAGKSTLMRILAKLQTNKGGRV CEEEEEECEECCCCCCEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE HLRGESWDHIPPPYWRCQVHYLAQKTVLFDGTIASNLARPFEIRIHSDKVFKIKLAQDLM EECCCCCCCCCCCHHEEEEEEEEEEEEEECCHHHHHCCCCEEEEEECCCEEEEEHHHHHH EQLLLPPALWEQDAKTLSGGEAARVALIRAMLIDPAILLLDEPTAALDDQAREVFYSLLK HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHH KWLKTPGRAAMLISHNHDYQTLDWVSFLDIVPS HHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCC >Mature Secondary Structure MLFAFEHISYDLGIDPVRHINVSGSLHEGEVLVVRGPSGAGKSTLMRILAKLQTNKGGRV CEEEEEECEECCCCCCEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE HLRGESWDHIPPPYWRCQVHYLAQKTVLFDGTIASNLARPFEIRIHSDKVFKIKLAQDLM EECCCCCCCCCCCHHEEEEEEEEEEEEEECCHHHHHCCCCEEEEEECCCEEEEEHHHHHH EQLLLPPALWEQDAKTLSGGEAARVALIRAMLIDPAILLLDEPTAALDDQAREVFYSLLK HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHH KWLKTPGRAAMLISHNHDYQTLDWVSFLDIVPS HHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]