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The map label for this gene is ygeV [H]

Identifier: 134299401

GI number: 134299401

Start: 1674975

End: 1676681

Strand: Reverse

Name: ygeV [H]

Synonym: Dred_1544

Alternate gene names: 134299401

Gene position: 1676681-1674975 (Counterclockwise)

Preceding gene: 134299407

Following gene: 134299400

Centisome position: 46.47

GC content: 43.41

Gene sequence:

>1707_bases
ATGACTTACAGCGGGGTAATTACTTCTGCCATTAACAGTTTAAAAAATCTGCTACCCTGTCAGGTCACCCTTTGGTACCA
GAGGAAAATAATCTATACATCTTTGCCAAACCCACTTAGCCAGTTGAATGACTGGCCCATTATCGAGGAAGCTAAACGAC
AAAATTCTGCCATTATGATTAATTCCCCCAGACAGCACCACCTCTGTGCCCAATGTCCGGTGATCGATATGTGCTCCTTG
GCCCTTGAGTTATTTTTCCCCTTTGCGGAAAATTCATTGACATCCGGCAGCGGTCTTTGCTTGCAATTTCCTCTAGAATC
CCTGACCTCCATGCAGGTAATGGGTTTAAACCAATGGCTGCGCCACCTGAAAAGCTATGCTCGTTATTTTGAATTTTTAA
TCAAAGAAGGTGTCTATAAACAAAAGGAGTTGTTGCATACTCAACAGCTCAATTATCTTTTATCCCTTGTCCCAGAGGGC
ATCGTCTTGTTGGATGAGCAAAAAAAAATCAGCACTCTCAACGAAAGGGCCGAACAACTCAATCTGGCCCATCACTATCA
TCACAAAAGGGATCTAAAGGACATCCATACCCAGGGACATCAATTCAATTCAGCCCTGTCCCCTATCCAGATCAAGGTGA
AAAACTTTTATCAGGATAAAAAATTCATTGGTGCCATCTGCCATACCCAGAACTTTGACACGATTAGCCCTCTACCACAA
AGGACCCAACGGTCCCCAGTGTTCCCTGGGATTATCGGCAAAGGTCCCGCCCTGCAAAAAATTCTTGAGATTATCAAACA
AGTTGCTAAATCCGAATCCACTGTTTTGCTGCGGGGTGAAAGCGGAACAGGCAAGGAATTATTTGCCCATTCCATTCATG
AATTAAGTTCAAGAAATAGCGGGCCCTTTGTAGCCATTAACTGTGCCGCTATTCCTGAGGCTCTTTTGGAAAGTGAATTG
TTTGGTTATGAAGAAGGGTCCTTCACCGGGGCCAGAAAAGGGGGAAAACCGGGTAAGGTGGAGCTTGCCAATAATGGCAC
CCTTTTCCTAGATGAAATTGGCGATATGCCATTAACACTACAGGCAAAACTTTTAAGGGTGATCCAAGAAAAAAACATTG
AACCCGTGGGGTGCTCCTATCCCCTGCCCATTAATGTGCGTTTGATCGCTGCCACCCACCGTAATTTGGAGGAAATGATC
GGAACAGGTACCTTCCGGGAAGACTTGTTTTTTCGTTTAAATGTCATCCCCATTTTTATTCCACCCTTGCGACAACGCCC
GGAAGACACTGAACTACTGCTTCATTATTATTTAAGAAAATACTGTATCTTGTTAAAGAAACCCTTTAAGATTTTGTCTT
ACGCCGCCTTGCAACAGTTAGTAAAATATCATTGGCCGGGCAACATCCGAGAACTGGAAAATTTGGTGGAATATCTGGTT
AATATTCACAACCAAGATATTATTTCTCCGGAGGATTTGCCAATCACCATTCAACAACCAATCAAAGAGGAAAATCAACC
AATTGGTATCCAGCCAGTGGAGCCTCAAACTCGAAAAAGCAGTGGACAACGGTCTCAAGCAGAACTTATTCAGATGCTAA
ATCGTTTCGGTTGGCATACTGATGGAAAGAAAAAGGCAGCGGCTGCTTTAGGAGTTAGTTTGGCCACCCTCTACCGTCGA
ATTAAAAAATATAAACTAAAGGAGTAA

Upstream 100 bases:

>100_bases
TATTTCTCATTATTTCGCATTAATTATCAATAATCGTCGTGTTGTCAATTATTCTCAATTTGGTTTATAGTATAGTTATT
ACATACTCGGAGGAAACAAC

Downstream 100 bases:

>100_bases
GCAAAGATGGCCGAAATCCTCATTGTTCAAGATATTTTACCATTATCCCTGGGCAGCATTCTGTTGGGTTCCGGCGGTGG
TGGCAATGCCTTTATTTTGA

Product: sigma-54 dependent trancsriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 568; Mature: 567

Protein sequence:

>568_residues
MTYSGVITSAINSLKNLLPCQVTLWYQRKIIYTSLPNPLSQLNDWPIIEEAKRQNSAIMINSPRQHHLCAQCPVIDMCSL
ALELFFPFAENSLTSGSGLCLQFPLESLTSMQVMGLNQWLRHLKSYARYFEFLIKEGVYKQKELLHTQQLNYLLSLVPEG
IVLLDEQKKISTLNERAEQLNLAHHYHHKRDLKDIHTQGHQFNSALSPIQIKVKNFYQDKKFIGAICHTQNFDTISPLPQ
RTQRSPVFPGIIGKGPALQKILEIIKQVAKSESTVLLRGESGTGKELFAHSIHELSSRNSGPFVAINCAAIPEALLESEL
FGYEEGSFTGARKGGKPGKVELANNGTLFLDEIGDMPLTLQAKLLRVIQEKNIEPVGCSYPLPINVRLIAATHRNLEEMI
GTGTFREDLFFRLNVIPIFIPPLRQRPEDTELLLHYYLRKYCILLKKPFKILSYAALQQLVKYHWPGNIRELENLVEYLV
NIHNQDIISPEDLPITIQQPIKEENQPIGIQPVEPQTRKSSGQRSQAELIQMLNRFGWHTDGKKKAAAALGVSLATLYRR
IKKYKLKE

Sequences:

>Translated_568_residues
MTYSGVITSAINSLKNLLPCQVTLWYQRKIIYTSLPNPLSQLNDWPIIEEAKRQNSAIMINSPRQHHLCAQCPVIDMCSL
ALELFFPFAENSLTSGSGLCLQFPLESLTSMQVMGLNQWLRHLKSYARYFEFLIKEGVYKQKELLHTQQLNYLLSLVPEG
IVLLDEQKKISTLNERAEQLNLAHHYHHKRDLKDIHTQGHQFNSALSPIQIKVKNFYQDKKFIGAICHTQNFDTISPLPQ
RTQRSPVFPGIIGKGPALQKILEIIKQVAKSESTVLLRGESGTGKELFAHSIHELSSRNSGPFVAINCAAIPEALLESEL
FGYEEGSFTGARKGGKPGKVELANNGTLFLDEIGDMPLTLQAKLLRVIQEKNIEPVGCSYPLPINVRLIAATHRNLEEMI
GTGTFREDLFFRLNVIPIFIPPLRQRPEDTELLLHYYLRKYCILLKKPFKILSYAALQQLVKYHWPGNIRELENLVEYLV
NIHNQDIISPEDLPITIQQPIKEENQPIGIQPVEPQTRKSSGQRSQAELIQMLNRFGWHTDGKKKAAAALGVSLATLYRR
IKKYKLKE
>Mature_567_residues
TYSGVITSAINSLKNLLPCQVTLWYQRKIIYTSLPNPLSQLNDWPIIEEAKRQNSAIMINSPRQHHLCAQCPVIDMCSLA
LELFFPFAENSLTSGSGLCLQFPLESLTSMQVMGLNQWLRHLKSYARYFEFLIKEGVYKQKELLHTQQLNYLLSLVPEGI
VLLDEQKKISTLNERAEQLNLAHHYHHKRDLKDIHTQGHQFNSALSPIQIKVKNFYQDKKFIGAICHTQNFDTISPLPQR
TQRSPVFPGIIGKGPALQKILEIIKQVAKSESTVLLRGESGTGKELFAHSIHELSSRNSGPFVAINCAAIPEALLESELF
GYEEGSFTGARKGGKPGKVELANNGTLFLDEIGDMPLTLQAKLLRVIQEKNIEPVGCSYPLPINVRLIAATHRNLEEMIG
TGTFREDLFFRLNVIPIFIPPLRQRPEDTELLLHYYLRKYCILLKKPFKILSYAALQQLVKYHWPGNIRELENLVEYLVN
IHNQDIISPEDLPITIQQPIKEENQPIGIQPVEPQTRKSSGQRSQAELIQMLNRFGWHTDGKKKAAAALGVSLATLYRRI
KKYKLKE

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=323, Percent_Identity=46.4396284829721, Blast_Score=293, Evalue=1e-80,
Organism=Escherichia coli, GI1788550, Length=318, Percent_Identity=44.0251572327044, Blast_Score=262, Evalue=5e-71,
Organism=Escherichia coli, GI87082117, Length=321, Percent_Identity=43.613707165109, Blast_Score=261, Evalue=6e-71,
Organism=Escherichia coli, GI1790437, Length=339, Percent_Identity=42.1828908554572, Blast_Score=259, Evalue=5e-70,
Organism=Escherichia coli, GI1786524, Length=332, Percent_Identity=40.9638554216867, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI1789087, Length=316, Percent_Identity=42.0886075949367, Blast_Score=243, Evalue=3e-65,
Organism=Escherichia coli, GI1788905, Length=256, Percent_Identity=46.484375, Blast_Score=240, Evalue=2e-64,
Organism=Escherichia coli, GI1790299, Length=343, Percent_Identity=39.9416909620991, Blast_Score=235, Evalue=6e-63,
Organism=Escherichia coli, GI87081872, Length=330, Percent_Identity=40, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI87082152, Length=324, Percent_Identity=39.8148148148148, Blast_Score=212, Evalue=4e-56,
Organism=Escherichia coli, GI1787583, Length=333, Percent_Identity=31.8318318318318, Blast_Score=183, Evalue=3e-47,
Organism=Escherichia coli, GI1789828, Length=249, Percent_Identity=36.5461847389558, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI87081858, Length=445, Percent_Identity=28.0898876404494, Blast_Score=150, Evalue=3e-37,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 64599; Mature: 64468

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYSGVITSAINSLKNLLPCQVTLWYQRKIIYTSLPNPLSQLNDWPIIEEAKRQNSAIMI
CCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCHHHHCCCCCCHHHHHCCCCEEEE
NSPRQHHLCAQCPVIDMCSLALELFFPFAENSLTSGSGLCLQFPLESLTSMQVMGLNQWL
ECCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH
RHLKSYARYFEFLIKEGVYKQKELLHTQQLNYLLSLVPEGIVLLDEQKKISTLNERAEQL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH
NLAHHYHHKRDLKDIHTQGHQFNSALSPIQIKVKNFYQDKKFIGAICHTQNFDTISPLPQ
HHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCH
RTQRSPVFPGIIGKGPALQKILEIIKQVAKSESTVLLRGESGTGKELFAHSIHELSSRNS
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
GPFVAINCAAIPEALLESELFGYEEGSFTGARKGGKPGKVELANNGTLFLDEIGDMPLTL
CCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCHH
QAKLLRVIQEKNIEPVGCSYPLPINVRLIAATHRNLEEMIGTGTFREDLFFRLNVIPIFI
HHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHCCCCHHHHHEEEEEEEEEEE
PPLRQRPEDTELLLHYYLRKYCILLKKPFKILSYAALQQLVKYHWPGNIRELENLVEYLV
CCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
NIHNQDIISPEDLPITIQQPIKEENQPIGIQPVEPQTRKSSGQRSQAELIQMLNRFGWHT
HCCCCCCCCCCCCCEEECCHHCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCC
DGKKKAAAALGVSLATLYRRIKKYKLKE
CCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TYSGVITSAINSLKNLLPCQVTLWYQRKIIYTSLPNPLSQLNDWPIIEEAKRQNSAIMI
CCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCHHHHCCCCCCHHHHHCCCCEEEE
NSPRQHHLCAQCPVIDMCSLALELFFPFAENSLTSGSGLCLQFPLESLTSMQVMGLNQWL
ECCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH
RHLKSYARYFEFLIKEGVYKQKELLHTQQLNYLLSLVPEGIVLLDEQKKISTLNERAEQL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH
NLAHHYHHKRDLKDIHTQGHQFNSALSPIQIKVKNFYQDKKFIGAICHTQNFDTISPLPQ
HHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCH
RTQRSPVFPGIIGKGPALQKILEIIKQVAKSESTVLLRGESGTGKELFAHSIHELSSRNS
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
GPFVAINCAAIPEALLESELFGYEEGSFTGARKGGKPGKVELANNGTLFLDEIGDMPLTL
CCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCHH
QAKLLRVIQEKNIEPVGCSYPLPINVRLIAATHRNLEEMIGTGTFREDLFFRLNVIPIFI
HHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHCCCCHHHHHEEEEEEEEEEE
PPLRQRPEDTELLLHYYLRKYCILLKKPFKILSYAALQQLVKYHWPGNIRELENLVEYLV
CCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
NIHNQDIISPEDLPITIQQPIKEENQPIGIQPVEPQTRKSSGQRSQAELIQMLNRFGWHT
HCCCCCCCCCCCCCEEECCHHCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCC
DGKKKAAAALGVSLATLYRRIKKYKLKE
CCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]