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The map label for this gene is yobQ [H]

Identifier: 134299365

GI number: 134299365

Start: 1635258

End: 1635980

Strand: Reverse

Name: yobQ [H]

Synonym: Dred_1506

Alternate gene names: 134299365

Gene position: 1635980-1635258 (Counterclockwise)

Preceding gene: 134299368

Following gene: 134299364

Centisome position: 45.34

GC content: 38.17

Gene sequence:

>723_bases
ATGGACGAGTTAAGAAATATTTTGTGTGAAAGACGAATTTACACCAATTCTTGTCTTAGCCATGCCCACTCCTTTGGCCA
ATTGCTGTTGCCCCTACAAGGAACTCTATTTATTGAGACTAACTTACACAGAGTAAGACTTGATAACAAGCACTTATTCT
TTTTACCACCTGGAGATAACCACACCTTCTATTCCAAGGACAAGAATGAATTTCTTGTCCTGGATATTCCCGCATCATTA
TTACCAGAACAAAACTATAAAAATATGGATGGTGGGGTTTATTTACCTTTGGACCAGCGTTGGGAATCTCTTCGGTTTTT
ATTTTTAAGTGAAACAGGAGCGCATTCTAAACCAAATCCATCCCTTCATGATTTGTTCAGATATGCCTCCCGTCTTTTAT
ACAATTTTGATCAACCAGTATCCATCCAATATGTGCAAAACCATTACCAGGAAAAAATATCTCTGGAGTATTTGGCGGCA
CTGGAACATTATAACCCGTCTTATTACTGTCAATGGTTTCAGAAAAAAACAGGACTTTCACCGCTTGCCTTTATTCAGAA
ACTCCGTTTAGAAAAAGCTAAATACCTTTTAATCAATACTGACTTCTCTTTATTAAGAATTGCTCAGGAGGTTGGCTATG
AACAGCAATCTTCTTTGGCGAGGTTGTTCAGGCAAAAAGAAGGTATGTCCGCCTCGGACTATCGAAAAGCTTTCCAAAGA
TAA

Upstream 100 bases:

>100_bases
TGCACAGTCAGGGTGCGATTTAGGCATGACAAAACAAAGGTCTTAGCTCTTTAAGAAAAATGCATTATAATAGTGATAGG
TATAATAAGGGGGTTAGGTT

Downstream 100 bases:

>100_bases
GATAAAGAAATGCTAAATAAAGGGCAAAAAAAGCCCTTTATTTTATTTATAATGAGGATAAGTATTTTTTGCAGGAGGGA
TGTCTTTGAAAGAGCATTAT

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MDELRNILCERRIYTNSCLSHAHSFGQLLLPLQGTLFIETNLHRVRLDNKHLFFLPPGDNHTFYSKDKNEFLVLDIPASL
LPEQNYKNMDGGVYLPLDQRWESLRFLFLSETGAHSKPNPSLHDLFRYASRLLYNFDQPVSIQYVQNHYQEKISLEYLAA
LEHYNPSYYCQWFQKKTGLSPLAFIQKLRLEKAKYLLINTDFSLLRIAQEVGYEQQSSLARLFRQKEGMSASDYRKAFQR

Sequences:

>Translated_240_residues
MDELRNILCERRIYTNSCLSHAHSFGQLLLPLQGTLFIETNLHRVRLDNKHLFFLPPGDNHTFYSKDKNEFLVLDIPASL
LPEQNYKNMDGGVYLPLDQRWESLRFLFLSETGAHSKPNPSLHDLFRYASRLLYNFDQPVSIQYVQNHYQEKISLEYLAA
LEHYNPSYYCQWFQKKTGLSPLAFIQKLRLEKAKYLLINTDFSLLRIAQEVGYEQQSSLARLFRQKEGMSASDYRKAFQR
>Mature_240_residues
MDELRNILCERRIYTNSCLSHAHSFGQLLLPLQGTLFIETNLHRVRLDNKHLFFLPPGDNHTFYSKDKNEFLVLDIPASL
LPEQNYKNMDGGVYLPLDQRWESLRFLFLSETGAHSKPNPSLHDLFRYASRLLYNFDQPVSIQYVQNHYQEKISLEYLAA
LEHYNPSYYCQWFQKKTGLSPLAFIQKLRLEKAKYLLINTDFSLLRIAQEVGYEQQSSLARLFRQKEGMSASDYRKAFQR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787987, Length=96, Percent_Identity=39.5833333333333, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 28310; Mature: 28310

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELRNILCERRIYTNSCLSHAHSFGQLLLPLQGTLFIETNLHRVRLDNKHLFFLPPGDN
CCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEECCEEEEECCCEEEEECCCCC
HTFYSKDKNEFLVLDIPASLLPEQNYKNMDGGVYLPLDQRWESLRFLFLSETGAHSKPNP
CCEECCCCCCEEEEECCHHHCCCCCCCCCCCCEEECHHHHHHHEEEEEEECCCCCCCCCC
SLHDLFRYASRLLYNFDQPVSIQYVQNHYQEKISLEYLAALEHYNPSYYCQWFQKKTGLS
CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
PLAFIQKLRLEKAKYLLINTDFSLLRIAQEVGYEQQSSLARLFRQKEGMSASDYRKAFQR
HHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MDELRNILCERRIYTNSCLSHAHSFGQLLLPLQGTLFIETNLHRVRLDNKHLFFLPPGDN
CCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEECCEEEEECCCEEEEECCCCC
HTFYSKDKNEFLVLDIPASLLPEQNYKNMDGGVYLPLDQRWESLRFLFLSETGAHSKPNP
CCEECCCCCCEEEEECCHHHCCCCCCCCCCCCEEECHHHHHHHEEEEEEECCCCCCCCCC
SLHDLFRYASRLLYNFDQPVSIQYVQNHYQEKISLEYLAALEHYNPSYYCQWFQKKTGLS
CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
PLAFIQKLRLEKAKYLLINTDFSLLRIAQEVGYEQQSSLARLFRQKEGMSASDYRKAFQR
HHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]