Click here to switch to the map view.

The map label for this gene is nodB [H]

Identifier: 134298511

GI number: 134298511

Start: 692849

End: 694126

Strand: Reverse

Name: nodB [H]

Synonym: Dred_0643

Alternate gene names: 134298511

Gene position: 694126-692849 (Counterclockwise)

Preceding gene: 134298512

Following gene: 134298501

Centisome position: 19.24

GC content: 45.31

Gene sequence:

>1278_bases
ATGTATCTTAACGTTTTTAAGCTCGCTGGCATAGCATTCTTTATTTACATACTGTTACCAACATTCCTGGGCAGGGTCCT
TTCCATTGGATCCTATCGTAGGGGAAACAAACACTCAGGCAAAGTGGCCTTAACCTTTGATGACGGGCCGGATCCACTTT
TCACCGCCCAGGTCCTCGATATTCTTCAACAGTATAATGCCAAAGCAAGCTTTTTCGTGGTAGGTAACCACGCCAAAAAA
CACCCGGAATTAATTCAACGTATCCTAGCAGAGGGACATAGCTTGGGCACCCATGGCTATCACCACAGCTTTGCTTGGCT
GCAAGGACCTATTGCTTCCATTCGAGAAATAATGCTGGGACATAAGTCAATAGCATTGATAGATGGTAAATTGCCACTAT
ACTTCCGCCCCTCCTGGGGGGTCTTTAATCTAGCAACCTACCTATATACGCTGTTGTCCCAACAAAAAACGGTACTCTGG
ACTTTCATGACCTGGGATTGGGATGCGAAATCCTCTGCGGAAAGTATCCATGATATTGTTACCCGCAAAACTAGGTCCGG
CTCTATTATTGTCTTTCATGACCGTTGCACCGGCTTTGGTGCGGCGGCAGAAGGACCAGTCAAAATGGTGCAGGCTCTGC
CGATTATCCTTAAGGAACTGAAATGCAAAGGCTTAGAACCTGTAAATCTGGAACAATTAATGCTTTACGATGACGTTGGC
TTTATAAAGAAAAACCTGCGCAGGTTATGGCAGGTTTGGGAGTTATGTTTTGATCGAATAGCTGGCCTAAAGCCAGTTGG
TAATGAGGGATTATTTCGTCTAGCAGTAAGAAGTTATAGAGGACAGACCTTGAAACTACCAGACGGTACTTTATTATCTC
CTGGGGATAAGGTAATAGAGCTTCACTTAAATAATGACTTTCTGCAACAACTTACAACAAAAGCCCGTTCTCTGGAGGCA
ACAGCCATTGCCCTGCTGCGAGAAACCCGACGTTCGTTACCACTACTGGCTAAGTTTATTTCTCAGGACCCTGCTTGCAA
CGGTACTAAGGCCCTCATAGGCATCACTATGATTCACAGGGGTACTCCCCAGCTAGGATTTACGGTCTACGATTTATCCC
CTAGGATTCGTTCCCTAGTGGCCTGGTATCAAAGATGGTTGTTGTTTTTAATGCATCCCGGTGGACTATCCCACATTCGT
CGCCAGTGGAGCAAACTGGTACCAAAAAAGGTGATCATTACCCGTAATGAGCTTTTAAATCGCTATCTACTGAGGTAA

Upstream 100 bases:

>100_bases
GCAGGGGCTATCTATATGAGTGCTTTTATATTAGCCTTCATGGGTATCTTTTATGTTTTATACCCTGTTGAAGAATTATT
AAAAAACCAGGAGAAAGAAA

Downstream 100 bases:

>100_bases
CAGTGCTTAGTTGTTTTCAAGGGGAAATACCAGCCCTGCAAAGGGCAGCAGCAAGGCCCGGAAATGGCAGCCATGTTTTT
TCTCAAGCATGCTTCGGGCA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MYLNVFKLAGIAFFIYILLPTFLGRVLSIGSYRRGNKHSGKVALTFDDGPDPLFTAQVLDILQQYNAKASFFVVGNHAKK
HPELIQRILAEGHSLGTHGYHHSFAWLQGPIASIREIMLGHKSIALIDGKLPLYFRPSWGVFNLATYLYTLLSQQKTVLW
TFMTWDWDAKSSAESIHDIVTRKTRSGSIIVFHDRCTGFGAAAEGPVKMVQALPIILKELKCKGLEPVNLEQLMLYDDVG
FIKKNLRRLWQVWELCFDRIAGLKPVGNEGLFRLAVRSYRGQTLKLPDGTLLSPGDKVIELHLNNDFLQQLTTKARSLEA
TAIALLRETRRSLPLLAKFISQDPACNGTKALIGITMIHRGTPQLGFTVYDLSPRIRSLVAWYQRWLLFLMHPGGLSHIR
RQWSKLVPKKVIITRNELLNRYLLR

Sequences:

>Translated_425_residues
MYLNVFKLAGIAFFIYILLPTFLGRVLSIGSYRRGNKHSGKVALTFDDGPDPLFTAQVLDILQQYNAKASFFVVGNHAKK
HPELIQRILAEGHSLGTHGYHHSFAWLQGPIASIREIMLGHKSIALIDGKLPLYFRPSWGVFNLATYLYTLLSQQKTVLW
TFMTWDWDAKSSAESIHDIVTRKTRSGSIIVFHDRCTGFGAAAEGPVKMVQALPIILKELKCKGLEPVNLEQLMLYDDVG
FIKKNLRRLWQVWELCFDRIAGLKPVGNEGLFRLAVRSYRGQTLKLPDGTLLSPGDKVIELHLNNDFLQQLTTKARSLEA
TAIALLRETRRSLPLLAKFISQDPACNGTKALIGITMIHRGTPQLGFTVYDLSPRIRSLVAWYQRWLLFLMHPGGLSHIR
RQWSKLVPKKVIITRNELLNRYLLR
>Mature_425_residues
MYLNVFKLAGIAFFIYILLPTFLGRVLSIGSYRRGNKHSGKVALTFDDGPDPLFTAQVLDILQQYNAKASFFVVGNHAKK
HPELIQRILAEGHSLGTHGYHHSFAWLQGPIASIREIMLGHKSIALIDGKLPLYFRPSWGVFNLATYLYTLLSQQKTVLW
TFMTWDWDAKSSAESIHDIVTRKTRSGSIIVFHDRCTGFGAAAEGPVKMVQALPIILKELKCKGLEPVNLEQLMLYDDVG
FIKKNLRRLWQVWELCFDRIAGLKPVGNEGLFRLAVRSYRGQTLKLPDGTLLSPGDKVIELHLNNDFLQQLTTKARSLEA
TAIALLRETRRSLPLLAKFISQDPACNGTKALIGITMIHRGTPQLGFTVYDLSPRIRSLVAWYQRWLLFLMHPGGLSHIR
RQWSKLVPKKVIITRNELLNRYLLR

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=164, Percent_Identity=31.0975609756098, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 48256; Mature: 48256

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLNVFKLAGIAFFIYILLPTFLGRVLSIGSYRRGNKHSGKVALTFDDGPDPLFTAQVLD
CEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
ILQQYNAKASFFVVGNHAKKHPELIQRILAEGHSLGTHGYHHSFAWLQGPIASIREIMLG
HHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCHHHHHHHHHHC
HKSIALIDGKLPLYFRPSWGVFNLATYLYTLLSQQKTVLWTFMTWDWDAKSSAESIHDIV
CCCEEEEECCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHH
TRKTRSGSIIVFHDRCTGFGAAAEGPVKMVQALPIILKELKCKGLEPVNLEQLMLYDDVG
HCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
FIKKNLRRLWQVWELCFDRIAGLKPVGNEGLFRLAVRSYRGQTLKLPDGTLLSPGDKVIE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEECCCCCEECCCCEEEE
LHLNNDFLQQLTTKARSLEATAIALLRETRRSLPLLAKFISQDPACNGTKALIGITMIHR
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEEEEEEC
GTPQLGFTVYDLSPRIRSLVAWYQRWLLFLMHPGGLSHIRRQWSKLVPKKVIITRNELLN
CCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHEEEEHHHHHH
RYLLR
HHHCC
>Mature Secondary Structure
MYLNVFKLAGIAFFIYILLPTFLGRVLSIGSYRRGNKHSGKVALTFDDGPDPLFTAQVLD
CEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
ILQQYNAKASFFVVGNHAKKHPELIQRILAEGHSLGTHGYHHSFAWLQGPIASIREIMLG
HHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCHHHHHHHHHHC
HKSIALIDGKLPLYFRPSWGVFNLATYLYTLLSQQKTVLWTFMTWDWDAKSSAESIHDIV
CCCEEEEECCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHH
TRKTRSGSIIVFHDRCTGFGAAAEGPVKMVQALPIILKELKCKGLEPVNLEQLMLYDDVG
HCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
FIKKNLRRLWQVWELCFDRIAGLKPVGNEGLFRLAVRSYRGQTLKLPDGTLLSPGDKVIE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEECCCCCEECCCCEEEE
LHLNNDFLQQLTTKARSLEATAIALLRETRRSLPLLAKFISQDPACNGTKALIGITMIHR
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEEEEEEC
GTPQLGFTVYDLSPRIRSLVAWYQRWLLFLMHPGGLSHIRRQWSKLVPKKVIITRNELLN
CCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHEEEEHHHHHH
RYLLR
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11214968; 8850088 [H]