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The map label for this gene is psd [H]

Identifier: 134298320

GI number: 134298320

Start: 488623

End: 489405

Strand: Reverse

Name: psd [H]

Synonym: Dred_0445

Alternate gene names: 134298320

Gene position: 489405-488623 (Counterclockwise)

Preceding gene: 134298322

Following gene: 134298315

Centisome position: 13.56

GC content: 36.65

Gene sequence:

>783_bases
TTGAATTTATTAAAAAAGGTTACTGTACATTCCATATCCCGTAAAAGTTTTGGCAAAGCCTTCAACTTTGCATGTCGTAG
CCGATTCAGCAAGTTTCTTATAAAACCCTACATTAGGCTTTATAAAATTAATCGCTCTGAAATACGAGCCCCCAAAGAAT
ATAAAAGTTTAACAGATTTTTTTGTAAGGGATATCTGCCCTACCCTTCGTCCCATCGCACCTGGTGAGGATGTAGTGGTT
AGCCCAGTAGACGGAAAAATTATGGATCTGGGCTATGCTAGGGAAAATAAAATTATTTTAGCTAAAAACAATTCTTATTC
AATTCCTGAGTTATTATCCAATCAGGGGTTGCATGAATTTAGAGATGGCTATTACCTAAACATATATCTGAGTCCCAGAA
ACTACCACCGTATCCATATGCCCTACCCTGCAAAAGCCATTAAACACAAGTACATTCCGGGTAAGGTTTTTCCTGTTAAT
AATCTTGGTATAACGACCATCAAAGATTTGTTTGCCAAGAACAAACGTACTTGTACTATATTTCAAACCACACAGGGTTA
TAAGTTTGCCCTCATTAAAGTAGGCGCCCTGGGTGTGGGTAAAATTGTTTCAAATTTTTCTATCGGACAGGAAATTAAGA
AAGGTATGGAAATTGGTAGGTTTGAATTTGGTTCCACTGTTATTATGATTTTCCAAAAGGATGCATTTATACCTGCAAAA
GGTTTAACTACCAATATAGAGATAAAAATGGGGCAACGGATAGGTAGCTTACAACCAGAATAA

Upstream 100 bases:

>100_bases
TTATCAGACTGTAAAATTTAACTGGAGTACTTTTATAAGATAGTGTTATAATTTATAGTGGTTTATAAGTATTCACTAAA
ACTGCAAAGGACTGGGAAAA

Downstream 100 bases:

>100_bases
AAAAGACGAGGACAACTGTGGATTGTCCCCGTCTTTTTATTTCATTTAGATAGAATCATTTAGTTCCTGTTCAGCCTGAA
TAATCTGATCCTTTGTCATA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MNLLKKVTVHSISRKSFGKAFNFACRSRFSKFLIKPYIRLYKINRSEIRAPKEYKSLTDFFVRDICPTLRPIAPGEDVVV
SPVDGKIMDLGYARENKIILAKNNSYSIPELLSNQGLHEFRDGYYLNIYLSPRNYHRIHMPYPAKAIKHKYIPGKVFPVN
NLGITTIKDLFAKNKRTCTIFQTTQGYKFALIKVGALGVGKIVSNFSIGQEIKKGMEIGRFEFGSTVIMIFQKDAFIPAK
GLTTNIEIKMGQRIGSLQPE

Sequences:

>Translated_260_residues
MNLLKKVTVHSISRKSFGKAFNFACRSRFSKFLIKPYIRLYKINRSEIRAPKEYKSLTDFFVRDICPTLRPIAPGEDVVV
SPVDGKIMDLGYARENKIILAKNNSYSIPELLSNQGLHEFRDGYYLNIYLSPRNYHRIHMPYPAKAIKHKYIPGKVFPVN
NLGITTIKDLFAKNKRTCTIFQTTQGYKFALIKVGALGVGKIVSNFSIGQEIKKGMEIGRFEFGSTVIMIFQKDAFIPAK
GLTTNIEIKMGQRIGSLQPE
>Mature_260_residues
MNLLKKVTVHSISRKSFGKAFNFACRSRFSKFLIKPYIRLYKINRSEIRAPKEYKSLTDFFVRDICPTLRPIAPGEDVVV
SPVDGKIMDLGYARENKIILAKNNSYSIPELLSNQGLHEFRDGYYLNIYLSPRNYHRIHMPYPAKAIKHKYIPGKVFPVN
NLGITTIKDLFAKNKRTCTIFQTTQGYKFALIKVGALGVGKIVSNFSIGQEIKKGMEIGRFEFGSTVIMIFQKDAFIPAK
GLTTNIEIKMGQRIGSLQPE

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790604, Length=229, Percent_Identity=35.8078602620087, Blast_Score=135, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI71980843, Length=227, Percent_Identity=26.8722466960352, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71980840, Length=225, Percent_Identity=27.1111111111111, Blast_Score=86, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6321609, Length=248, Percent_Identity=29.4354838709677, Blast_Score=100, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24649526, Length=258, Percent_Identity=26.7441860465116, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24649528, Length=258, Percent_Identity=26.7441860465116, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24649524, Length=258, Percent_Identity=26.7441860465116, Blast_Score=82, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 29594; Mature: 29594

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLKKVTVHSISRKSFGKAFNFACRSRFSKFLIKPYIRLYKINRSEIRAPKEYKSLTDF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHCCCHHHHHHHHH
FVRDICPTLRPIAPGEDVVVSPVDGKIMDLGYARENKIILAKNNSYSIPELLSNQGLHEF
HHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCCCEEEEEECCCCCCHHHHHCCCHHHH
RDGYYLNIYLSPRNYHRIHMPYPAKAIKHKYIPGKVFPVNNLGITTIKDLFAKNKRTCTI
CCCEEEEEEECCCCCEEEECCCCHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
FQTTQGYKFALIKVGALGVGKIVSNFSIGQEIKKGMEIGRFEFGSTVIMIFQKDAFIPAK
EEECCCCEEEEEEECCCCHHHHHHCCHHHHHHHHHHHCCCEECCCEEEEEEECCCCCCCC
GLTTNIEIKMGQRIGSLQPE
CCEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MNLLKKVTVHSISRKSFGKAFNFACRSRFSKFLIKPYIRLYKINRSEIRAPKEYKSLTDF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHCCCHHHHHHHHH
FVRDICPTLRPIAPGEDVVVSPVDGKIMDLGYARENKIILAKNNSYSIPELLSNQGLHEF
HHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCCCEEEEEECCCCCCHHHHHCCCHHHH
RDGYYLNIYLSPRNYHRIHMPYPAKAIKHKYIPGKVFPVNNLGITTIKDLFAKNKRTCTI
CCCEEEEEEECCCCCEEEECCCCHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
FQTTQGYKFALIKVGALGVGKIVSNFSIGQEIKKGMEIGRFEFGSTVIMIFQKDAFIPAK
EEECCCCEEEEEEECCCCHHHHHHCCHHHHHHHHHHHCCCEECCCEEEEEEECCCCCCCC
GLTTNIEIKMGQRIGSLQPE
CCEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA