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The map label for this gene is spoU-3

Identifier: 13357887

GI number: 13357887

Start: 372921

End: 373694

Strand: Direct

Name: spoU-3

Synonym: UU327

Alternate gene names: 13357887

Gene position: 372921-373694 (Clockwise)

Preceding gene: 13357886

Following gene: 13357888

Centisome position: 49.61

GC content: 21.58

Gene sequence:

>774_bases
ATGTTAAAAATTATTACATCTAATAAAAATGAAGAAATTATTCATTTTTATCGTTTAATTCATGATAAAAAATATCGCGA
AGCTAATAAATTATTCATAATTGAGGGTTTTAAATTATTAGATGAAGCTTTGCAAAATCAACAAACAATAGTTTCAATTA
TTATTAATGAACATGTTTATAATAAAGAATTTGAAACGATTTTTAAATATACATTATATGACAATATTCAAATTTATAAA
GTTAGTGGAAATATTATTAAAAAACTATCAGTTAATATCGAACCAAGTCCAATTTTAGCAGTTGTTAAAATAAAACAAGA
AATGTGTGATATTAACGATAATATTTTATTGTTAGATAATATTCAAGATCCAGGTAATTTAGGAACCATTTTAAGAACCT
GCTTTGCTTTCAATATTAAACAAGTTATTTTTAATAATTGTGTTGATTTATATAATCCTAAAACAATTAAAGCAAGTATG
GGGGCCATTTTTAAAATTAATTTTTTACGTTTTAATGATTCTAAACTAGCATTAAATTTTTTATTAAAAAATAAATTCTA
TTTAATTGCTACTATTTTAGATAAAAACGCAATTTCTTTAAACGAAATAACGATTAAACAAAAATATTGTTTAATGGTAG
GTAATGAAGGTCATGGTTTGGTACAAACTTTTATTGATCATGCTCACATTAAAACAATGATTAAAATGAATCAAACAGAA
TCATTAAATGTTGCAGTAGCAGCAGCAATTTTTTTATATGAACTTAATAAATAA

Upstream 100 bases:

>100_bases
ATTCCAAAAGTTTAGTAAATCACAAAAGGATGAAGAAAAAGAAATAAAAAACGATACTGAAATAAAAACTGCGACTAAAC
CTACTAAAAAATCTTAATTT

Downstream 100 bases:

>100_bases
AGAACTTTTTTTAATTACTGGTGACAATCGTTTAAAAATGGATCAAAAAATTAATGAAATTGCGACCTCTTTTGATGAAT
TAGTTAAAATTAATGATCAA

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MLKIITSNKNEEIIHFYRLIHDKKYREANKLFIIEGFKLLDEALQNQQTIVSIIINEHVYNKEFETIFKYTLYDNIQIYK
VSGNIIKKLSVNIEPSPILAVVKIKQEMCDINDNILLLDNIQDPGNLGTILRTCFAFNIKQVIFNNCVDLYNPKTIKASM
GAIFKINFLRFNDSKLALNFLLKNKFYLIATILDKNAISLNEITIKQKYCLMVGNEGHGLVQTFIDHAHIKTMIKMNQTE
SLNVAVAAAIFLYELNK

Sequences:

>Translated_257_residues
MLKIITSNKNEEIIHFYRLIHDKKYREANKLFIIEGFKLLDEALQNQQTIVSIIINEHVYNKEFETIFKYTLYDNIQIYK
VSGNIIKKLSVNIEPSPILAVVKIKQEMCDINDNILLLDNIQDPGNLGTILRTCFAFNIKQVIFNNCVDLYNPKTIKASM
GAIFKINFLRFNDSKLALNFLLKNKFYLIATILDKNAISLNEITIKQKYCLMVGNEGHGLVQTFIDHAHIKTMIKMNQTE
SLNVAVAAAIFLYELNK
>Mature_257_residues
MLKIITSNKNEEIIHFYRLIHDKKYREANKLFIIEGFKLLDEALQNQQTIVSIIINEHVYNKEFETIFKYTLYDNIQIYK
VSGNIIKKLSVNIEPSPILAVVKIKQEMCDINDNILLLDNIQDPGNLGTILRTCFAFNIKQVIFNNCVDLYNPKTIKASM
GAIFKINFLRFNDSKLALNFLLKNKFYLIATILDKNAISLNEITIKQKYCLMVGNEGHGLVQTFIDHAHIKTMIKMNQTE
SLNVAVAAAIFLYELNK

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 29655; Mature: 29655

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKIITSNKNEEIIHFYRLIHDKKYREANKLFIIEGFKLLDEALQNQQTIVSIIINEHVY
CEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHCCCCEEEEEEEECCCC
NKEFETIFKYTLYDNIQIYKVSGNIIKKLSVNIEPSPILAVVKIKQEMCDINDNILLLDN
CCHHHHHEEEEEECCEEEEEECCCEEEEEEECCCCCCEEEEEEEHHHHCCCCCCEEEEEC
IQDPGNLGTILRTCFAFNIKQVIFNNCVDLYNPKTIKASMGAIFKINFLRFNDSKLALNF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEEEEECCCCEEEEE
LLKNKFYLIATILDKNAISLNEITIKQKYCLMVGNEGHGLVQTFIDHAHIKTMIKMNQTE
ECCCCEEEEEEEECCCCEEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHEEECCCC
SLNVAVAAAIFLYELNK
CCHHHHEEEEEEEEECC
>Mature Secondary Structure
MLKIITSNKNEEIIHFYRLIHDKKYREANKLFIIEGFKLLDEALQNQQTIVSIIINEHVY
CEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHCCCCEEEEEEEECCCC
NKEFETIFKYTLYDNIQIYKVSGNIIKKLSVNIEPSPILAVVKIKQEMCDINDNILLLDN
CCHHHHHEEEEEECCEEEEEECCCEEEEEEECCCCCCEEEEEEEHHHHCCCCCCEEEEEC
IQDPGNLGTILRTCFAFNIKQVIFNNCVDLYNPKTIKASMGAIFKINFLRFNDSKLALNF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEEEEECCCCEEEEE
LLKNKFYLIATILDKNAISLNEITIKQKYCLMVGNEGHGLVQTFIDHAHIKTMIKMNQTE
ECCCCEEEEEEEECCCCEEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHEEECCCC
SLNVAVAAAIFLYELNK
CCHHHHEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]