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The map label for this gene is rnc

Identifier: 13357763

GI number: 13357763

Start: 249743

End: 250453

Strand: Reverse

Name: rnc

Synonym: UU205

Alternate gene names: 13357763

Gene position: 250453-249743 (Counterclockwise)

Preceding gene: 13357764

Following gene: 13357762

Centisome position: 33.32

GC content: 26.72

Gene sequence:

>711_bases
ATGGACAATAAAAAATTTTTAGATTTTTTAAAACAAAATAGAATTGAACCAAAAAATTTATCTATTTATCTTGAAGCATT
AACACATAAATCTTATGCAAACGAGCATAAACTTACTAAAAACTATCAACGTTTAGAATTTTTAGGTGATGCTTGTGTTG
AATGGGTAATTAGCAATTTTATTTTTAACTACAAAATTAAAGATAATGAAAAAATGCGTTCTTTAGATGAAGGTGAAATG
ACTCGAGCGCGTTCTAATATGGTACGAAGCGAGATTTTATCATATGCTGCTAAAGATTTAGGGTTAACTGATTTTTTAAT
GATTGGTGTTGGTTTAGAACAAGACCAATCAGCTCGTATGGAAAAAATCTATGAAGATATTTTTGAAGCATTTATAGGTG
CTGTAGCTCAAGATCAAGGTATTAAAAAAGTTTCATTAATTCTTGAAAAAACTTTAATTAAATATTTTAGAGAAGGCCAA
ATTAATTATCAAAAAGATTATAAAACGATTTTTCAAGAACAAGCCCAACGTATTAATAAAAAACCTATTATGTATAAATT
AGTACGTAATGAAGGCGATAAAAAAGAAGTCCATTTAGTTTGAAATGATTTAATTTATGGAATTGGAATAGCATCAACGC
GAAAAGAAGCAGAAATTTTAGCAGCTAAAAATGCAATTTTAAAACTTGATGATTATACAAAAAAAGCATAA

Upstream 100 bases:

>100_bases
AGTGCTGATTACCAACAATTTATGAGTGCTTTAAAAATTTTGTATGAAACAATTAAAGCAGATGTTTTAAATGAAATTAA
AAAAGATTTAAATAATTATT

Downstream 100 bases:

>100_bases
TTATGTTAAAATTATTAGATATTGATTTCTTGCATAGTTTGATTTAAAATCTTCGAAATTAAACTAAGTTAGGAATAGAT
TAAAAAAATATACAATTCAA

Product: ribonuclease III

Products: NA

Alternate protein names: Ribonuclease III; RNase III [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MDNKKFLDFLKQNRIEPKNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNFIFNYKIKDNEKMRSLDEGEM
TRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARMEKIYEDIFEAFIGAVAQDQGIKKVSLILEKTLIKYFREGQ
INYQKDYKTIFQEQAQRINKKPIMYKLVRNEGDKKEVHLVWNDLIYGIGIASTRKEAEILAAKNAILKLDDYTKKA

Sequences:

>Translated_236_residues
MDNKKFLDFLKQNRIEPKNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNFIFNYKIKDNEKMRSLDEGEM
TRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARMEKIYEDIFEAFIGAVAQDQGIKKVSLILEKTLIKYFREGQ
INYQKDYKTIFQEQAQRINKKPIMYKLVRNEGDKKEVHLV*NDLIYGIGIASTRKEAEILAAKNAILKLDDYTKKA
>Mature_236_residues
MDNKKFLDFLKQNRIEPKNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNFIFNYKIKDNEKMRSLDEGEM
TRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARMEKIYEDIFEAFIGAVAQDQGIKKVSLILEKTLIKYFREGQ
INYQKDYKTIFQEQAQRINKKPIMYKLVRNEGDKKEVHLV*NDLIYGIGIASTRKEAEILAAKNAILKLDDYTKKA

Specific function: Digests double-stranded RNA. Involved in the processing of ribosomal RNA precursors and of some mRNAs [H]

COG id: COG0571

COG function: function code K; dsRNA-specific ribonuclease

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

Organism=Escherichia coli, GI1788920, Length=203, Percent_Identity=31.5270935960591, Blast_Score=81, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001159
- InterPro:   IPR014720
- InterPro:   IPR000999
- InterPro:   IPR011907 [H]

Pfam domain/function: PF00035 dsrm; PF00636 Ribonuclease_3 [H]

EC number: =3.1.26.3 [H]

Molecular weight: Translated: 27366; Mature: 27366

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS50137 DS_RBD ; PS00517 RNASE_3_1 ; PS50142 RNASE_3_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNKKFLDFLKQNRIEPKNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNF
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFNYKIKDNEKMRSLDEGEMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARM
HEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHH
EKIYEDIFEAFIGAVAQDQGIKKVSLILEKTLIKYFREGQINYQKDYKTIFQEQAQRINK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
KPIMYKLVRNEGDKKEVHLVNDLIYGIGIASTRKEAEILAAKNAILKLDDYTKKA
CCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEECCCCCCC
>Mature Secondary Structure
MDNKKFLDFLKQNRIEPKNLSIYLEALTHKSYANEHKLTKNYQRLEFLGDACVEWVISNF
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFNYKIKDNEKMRSLDEGEMTRARSNMVRSEILSYAAKDLGLTDFLMIGVGLEQDQSARM
HEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHH
EKIYEDIFEAFIGAVAQDQGIKKVSLILEKTLIKYFREGQINYQKDYKTIFQEQAQRINK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
KPIMYKLVRNEGDKKEVHLVNDLIYGIGIASTRKEAEILAAKNAILKLDDYTKKA
CCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11048724 [H]