Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

Click here to switch to the map view.

The map label for this gene is 126701239

Identifier: 126701239

GI number: 126701239

Start: 4219388

End: 4219840

Strand: Direct

Name: 126701239

Synonym: CD3613

Alternate gene names: NA

Gene position: 4219388-4219840 (Clockwise)

Preceding gene: 126701229

Following gene: 126701244

Centisome position: 98.35

GC content: 26.05

Gene sequence:

>453_bases
TTGGTTAATTTAAATGCAAATAATCTAAATGTAAATATGGTTTATCCTATTTCTTCCACAGCACCCATACGTTTCAGAAG
ATATACTGTTTCATATTTAGAAAACATGGAAAATATTTATTTAACTATAGCAACATACTTTGATACACTTGGTTTAGGCA
CAATGAATATCGACAAAGTTTATGGTCAATGGGCTTGGTTTACTGATAATATATATGATTTAAATCTATTTGTTTTTGTA
GGAAATTATCCTTATCAAATTGCTAAAAACAGATATGATACATTTGTAGATATTTTGCCAGTAGCTATTACTTCTATTGT
CAATGGAGATAGAGTATTTTTAATTTCAAATCCTTGTTTGTTAAATTCAAAAATTACAGTTAGATTTATATCTAGTCATC
CTACTCTTAATAGAACAGTTGATTATGGCAATATTAGAGATTTTATTTTTTAA

Upstream 100 bases:

>100_bases
TTACCACTTTTTCAATATATAAAATATTACACTTTAGATGTAACAAAATCGCATCCATTTAAATATTGTATTTTATAGAC
TAATTTTAGGATGTGATACT

Downstream 100 bases:

>100_bases
AACTGCAACATGATGTGCTATTAAAAAATACCCTAAATTTAATGATATTATTAAATAACTAGAATATTTTTAATTGGCAC
ATCATGCCTAGCTATTATAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MVNLNANNLNVNMVYPISSTAPIRFRRYTVSYLENMENIYLTIATYFDTLGLGTMNIDKVYGQWAWFTDNIYDLNLFVFV
GNYPYQIAKNRYDTFVDILPVAITSIVNGDRVFLISNPCLLNSKITVRFISSHPTLNRTVDYGNIRDFIF

Sequences:

>Translated_150_residues
MVNLNANNLNVNMVYPISSTAPIRFRRYTVSYLENMENIYLTIATYFDTLGLGTMNIDKVYGQWAWFTDNIYDLNLFVFV
GNYPYQIAKNRYDTFVDILPVAITSIVNGDRVFLISNPCLLNSKITVRFISSHPTLNRTVDYGNIRDFIF
>Mature_150_residues
MVNLNANNLNVNMVYPISSTAPIRFRRYTVSYLENMENIYLTIATYFDTLGLGTMNIDKVYGQWAWFTDNIYDLNLFVFV
GNYPYQIAKNRYDTFVDILPVAITSIVNGDRVFLISNPCLLNSKITVRFISSHPTLNRTVDYGNIRDFIF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17379; Mature: 17379

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNLNANNLNVNMVYPISSTAPIRFRRYTVSYLENMENIYLTIATYFDTLGLGTMNIDKV
CEEECCCCEEEEEEEECCCCCCEEEEEEEHHHHCCCCEEEEEEEEEHHHHCCCCCCHHHH
YGQWAWFTDNIYDLNLFVFVGNYPYQIAKNRYDTFVDILPVAITSIVNGDRVFLISNPCL
HCEEEEEECCEEEEEEEEEECCCCEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCEE
LNSKITVRFISSHPTLNRTVDYGNIRDFIF
ECCEEEEEEECCCCCCCEEECCCCEEECCC
>Mature Secondary Structure
MVNLNANNLNVNMVYPISSTAPIRFRRYTVSYLENMENIYLTIATYFDTLGLGTMNIDKV
CEEECCCCEEEEEEEECCCCCCEEEEEEEHHHHCCCCEEEEEEEEEHHHHCCCCCCHHHH
YGQWAWFTDNIYDLNLFVFVGNYPYQIAKNRYDTFVDILPVAITSIVNGDRVFLISNPCL
HCEEEEEECCEEEEEEEEEECCCCEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCEE
LNSKITVRFISSHPTLNRTVDYGNIRDFIF
ECCEEEEEEECCCCCCCEEECCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA