| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126701222
Identifier: 126701222
GI number: 126701222
Start: 4201307
End: 4202536
Strand: Direct
Name: 126701222
Synonym: CD3595
Alternate gene names: NA
Gene position: 4201307-4202536 (Clockwise)
Preceding gene: 126701210
Following gene: 126701229
Centisome position: 97.93
GC content: 31.79
Gene sequence:
>1230_bases ATGAATTTAAATAGAAATTTAGAAAAATACGCTGAATTAGCAATAAAAGTTGGAGTTAACATACAGCCAGGTCAAATTCT ACTTATAAAGTCACCAATAGAATGTGCTGATTTTGCAAGAAATGCACTTAAAGAAGCATATAAATGTGGTGCTAAAAATG TTTATATAGAGTGGTCTGATGAAGAAAGTACTCTTATTAAATACTTATATGCTCCAGATGAAGCATTTCATGAGTTCCCC AAATGGACAGCAGAACAATATGTAGATATAGCAAAAGAAGGTGGGGCATTTTTATCAGTCTATGCCCAAAATCCAGATTT ATTAAAAGATGTTGACCCTGAAAGAGTTGCAAATTTTCAGAAGGCATCTGGAAAAGCTTTAAAAGAATGGCGTTCTTACA CTCTAACTGATAAATGTAAATGGAGTATAGTCTCTGTGCCAACAAAAGATTGGGCAAAAAAAGTGTTTCCAAATTTATCA GAAGATAAAGCAATAGAAAAACTGTGGGATGCTATATTTAAATGTTCAAGAGTAGATGGTCAGGACCCTATAAAAGCATG GGAAGAACATAATGAAAATCTTAAATCTAAAATGGACTTTCTAAATAAAAATAACTTTAAAACTTTAAAATATAAATCCT CAAAAACTGATTTGACTCTAGACTTGCCAAAGGGTCATGTTTGGCTAAGTGGAGCATCCAAAGACCCTAATGGAATAAGT TTTAATCCGAATATTCCAACTGAAGAGATTTTTGGAATGCCACATAAGTTTAAAGTAAATGGAACTGTTTATAGTACAAA ACCTCTTGTTTATGGTGGAAACATAATTGACAATTTCTTCTTAACATTTAAAGATGGTAAAATAATAGATTTCTCTGCTG AAAAGGGACTAGATACACTAGAAAAACTTATTGAAACGGATGAAGGCTCTCATTATTTAGGAGAAGTCGCTCTTGTTCCA TACAACTCACCAATATCCAATACGGATATAATTTTTTATAATACTCTATATGATGAAAATGCTTCTTGCCACTTTGCAAT TGGTTCTGCTTATAAGACTTGTCTGGAAGGTGGAAACAATTTAAAAGATGAAGAATTGGATGAACATGGTGTAAATGATA GTTTAACACATGTAGATTTTATGATTGGTTCTGCTGATATGGATATTATTGGTGAGACTTATGATGGAAAGCAAATACAG ATTTTTAAAAATGGTAATTGGGCTTTTTAA
Upstream 100 bases:
>100_bases GTAAAGTTATAATATTTTATAAGTTGTTCAATATTAAAAACATAAGTAATGTTATAATACTTTATAAGTTATTCAATATT AAAAATATAGGAGGATAAAT
Downstream 100 bases:
>100_bases CATATGATTTTAACTAAAAAGGGCTGATGGAAGTTATACCAGACTTCCCAGCCCTTTTTAATGTTGATGATAAATATTTT TTATATTAATTAATCTCATT
Product: aminopeptidase
Products: NA
Alternate protein names: Aminopeptidase II; AP-II [H]
Number of amino acids: Translated: 409; Mature: 409
Protein sequence:
>409_residues MNLNRNLEKYAELAIKVGVNIQPGQILLIKSPIECADFARNALKEAYKCGAKNVYIEWSDEESTLIKYLYAPDEAFHEFP KWTAEQYVDIAKEGGAFLSVYAQNPDLLKDVDPERVANFQKASGKALKEWRSYTLTDKCKWSIVSVPTKDWAKKVFPNLS EDKAIEKLWDAIFKCSRVDGQDPIKAWEEHNENLKSKMDFLNKNNFKTLKYKSSKTDLTLDLPKGHVWLSGASKDPNGIS FNPNIPTEEIFGMPHKFKVNGTVYSTKPLVYGGNIIDNFFLTFKDGKIIDFSAEKGLDTLEKLIETDEGSHYLGEVALVP YNSPISNTDIIFYNTLYDENASCHFAIGSAYKTCLEGGNNLKDEELDEHGVNDSLTHVDFMIGSADMDIIGETYDGKQIQ IFKNGNWAF
Sequences:
>Translated_409_residues MNLNRNLEKYAELAIKVGVNIQPGQILLIKSPIECADFARNALKEAYKCGAKNVYIEWSDEESTLIKYLYAPDEAFHEFP KWTAEQYVDIAKEGGAFLSVYAQNPDLLKDVDPERVANFQKASGKALKEWRSYTLTDKCKWSIVSVPTKDWAKKVFPNLS EDKAIEKLWDAIFKCSRVDGQDPIKAWEEHNENLKSKMDFLNKNNFKTLKYKSSKTDLTLDLPKGHVWLSGASKDPNGIS FNPNIPTEEIFGMPHKFKVNGTVYSTKPLVYGGNIIDNFFLTFKDGKIIDFSAEKGLDTLEKLIETDEGSHYLGEVALVP YNSPISNTDIIFYNTLYDENASCHFAIGSAYKTCLEGGNNLKDEELDEHGVNDSLTHVDFMIGSADMDIIGETYDGKQIQ IFKNGNWAF >Mature_409_residues MNLNRNLEKYAELAIKVGVNIQPGQILLIKSPIECADFARNALKEAYKCGAKNVYIEWSDEESTLIKYLYAPDEAFHEFP KWTAEQYVDIAKEGGAFLSVYAQNPDLLKDVDPERVANFQKASGKALKEWRSYTLTDKCKWSIVSVPTKDWAKKVFPNLS EDKAIEKLWDAIFKCSRVDGQDPIKAWEEHNENLKSKMDFLNKNNFKTLKYKSSKTDLTLDLPKGHVWLSGASKDPNGIS FNPNIPTEEIFGMPHKFKVNGTVYSTKPLVYGGNIIDNFFLTFKDGKIIDFSAEKGLDTLEKLIETDEGSHYLGEVALVP YNSPISNTDIIFYNTLYDENASCHFAIGSAYKTCLEGGNNLKDEELDEHGVNDSLTHVDFMIGSADMDIIGETYDGKQIQ IFKNGNWAF
Specific function: Broad specificity metal-dependent exopeptidase, releasing all N-terminal amino acids [H]
COG id: COG2309
COG function: function code E; Leucyl aminopeptidase (aminopeptidase T)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M29 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000787 [H]
Pfam domain/function: PF02073 Peptidase_M29 [H]
EC number: NA
Molecular weight: Translated: 46234; Mature: 46234
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLNRNLEKYAELAIKVGVNIQPGQILLIKSPIECADFARNALKEAYKCGAKNVYIEWSD CCCCCCHHHHHHEEEEECCEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECC EESTLIKYLYAPDEAFHEFPKWTAEQYVDIAKEGGAFLSVYAQNPDLLKDVDPERVANFQ CCCEEEEEEECCCHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHH KASGKALKEWRSYTLTDKCKWSIVSVPTKDWAKKVFPNLSEDKAIEKLWDAIFKCSRVDG HHCCHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC QDPIKAWEEHNENLKSKMDFLNKNNFKTLKYKSSKTDLTLDLPKGHVWLSGASKDPNGIS CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCEEEEECCCCCCCCEE FNPNIPTEEIFGMPHKFKVNGTVYSTKPLVYGGNIIDNFFLTFKDGKIIDFSAEKGLDTL ECCCCCHHHHHCCCCEEEECCEEEECCCEEECCCEEECEEEEEECCEEEEECHHCCHHHH EKLIETDEGSHYLGEVALVPYNSPISNTDIIFYNTLYDENASCHFAIGSAYKTCLEGGNN HHHHCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEHHHHHHHHCCCCC LKDEELDEHGVNDSLTHVDFMIGSADMDIIGETYDGKQIQIFKNGNWAF CCCHHHHHCCCCCCCEEEEEEECCCCCEEECCCCCCCEEEEEECCCCCC >Mature Secondary Structure MNLNRNLEKYAELAIKVGVNIQPGQILLIKSPIECADFARNALKEAYKCGAKNVYIEWSD CCCCCCHHHHHHEEEEECCEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECC EESTLIKYLYAPDEAFHEFPKWTAEQYVDIAKEGGAFLSVYAQNPDLLKDVDPERVANFQ CCCEEEEEEECCCHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHH KASGKALKEWRSYTLTDKCKWSIVSVPTKDWAKKVFPNLSEDKAIEKLWDAIFKCSRVDG HHCCHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC QDPIKAWEEHNENLKSKMDFLNKNNFKTLKYKSSKTDLTLDLPKGHVWLSGASKDPNGIS CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCEEEEECCCCCCCCEE FNPNIPTEEIFGMPHKFKVNGTVYSTKPLVYGGNIIDNFFLTFKDGKIIDFSAEKGLDTL ECCCCCHHHHHCCCCEEEECCEEEECCCEEECCCEEECEEEEEECCEEEEECHHCCHHHH EKLIETDEGSHYLGEVALVPYNSPISNTDIIFYNTLYDENASCHFAIGSAYKTCLEGGNN HHHHCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEHHHHHHHHCCCCC LKDEELDEHGVNDSLTHVDFMIGSADMDIIGETYDGKQIQIFKNGNWAF CCCHHHHHCCCCCCCEEEEEEECCCCCEEECCCCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9362117; 938681 [H]