| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126700974
Identifier: 126700974
GI number: 126700974
Start: 3918548
End: 3919216
Strand: Direct
Name: 126700974
Synonym: CD3354
Alternate gene names: NA
Gene position: 3918548-3919216 (Clockwise)
Preceding gene: 126700968
Following gene: 126700976
Centisome position: 91.34
GC content: 25.26
Gene sequence:
>669_bases ATGTTAGAGGTATCACATAAAGTTAAAGAAATTTATCCCAATATTAAATTTGGAGTTATGGTTATAAATATTACACATTC AAAACCTAATAAAGAAAATTTTTTAGTTCTTAAAAACTCTACAATTAAAAATATTATAGAACAACACCCAGAATACAATC GCAAAGAAAAAATTAAAACAGAGCCTGTTTCAAGTTATATAAAGTATTATAAAAAATTCAAGAAAACTTACCCTGTATTG CTTCAATTAGAATCTATTCTATTAAAATCAAAAGGTATCCCAGATGTAGGTGTAACAATTGAGTCAATGTTTTTAGCAGA ATTGAAAAATCTTCTTCTAACAGCAGGTCATGACCTTGATAAAATGGAATTACCTTTGAAAATAGAATTAGCAAATGGAA GTGAACATTTTTATGGTATAGGTGGTAAAGAACATATTTTAACAAAAGATGATTTATTTTTATCAGATAATATTGGTATA TTATCTAGTATTCTTAATGGCCCTGATAATCGAACAGCTATAACAAAAGATACTAAAAATATTATGTATTTTGTATATGG ACCTGATAAAATATCAGAAAAGCAAATTCAAGACCATTTAAATGACATAAAACACTATATTTCAAGTGCTTTTCCAGATT TAAAAGTTAATTCAATTGATATATTTTAG
Upstream 100 bases:
>100_bases AAGTGGTTCTATAAAATTACTATAAAAATGGAACTATAAAATCCACTTTTAATTTGCTAAGATTATATCATAAAATATAA AATAAAAAGGAGTCTATATT
Downstream 100 bases:
>100_bases TTAATATATTAAAATCCTCATAAATATTTTGAATAAATAAATTAGTGAAGTATACATTCTAGTTAAACTAGATATACTTC ACTAAAATTAATTATATGTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 222; Mature: 222
Protein sequence:
>222_residues MLEVSHKVKEIYPNIKFGVMVINITHSKPNKENFLVLKNSTIKNIIEQHPEYNRKEKIKTEPVSSYIKYYKKFKKTYPVL LQLESILLKSKGIPDVGVTIESMFLAELKNLLLTAGHDLDKMELPLKIELANGSEHFYGIGGKEHILTKDDLFLSDNIGI LSSILNGPDNRTAITKDTKNIMYFVYGPDKISEKQIQDHLNDIKHYISSAFPDLKVNSIDIF
Sequences:
>Translated_222_residues MLEVSHKVKEIYPNIKFGVMVINITHSKPNKENFLVLKNSTIKNIIEQHPEYNRKEKIKTEPVSSYIKYYKKFKKTYPVL LQLESILLKSKGIPDVGVTIESMFLAELKNLLLTAGHDLDKMELPLKIELANGSEHFYGIGGKEHILTKDDLFLSDNIGI LSSILNGPDNRTAITKDTKNIMYFVYGPDKISEKQIQDHLNDIKHYISSAFPDLKVNSIDIF >Mature_222_residues MLEVSHKVKEIYPNIKFGVMVINITHSKPNKENFLVLKNSTIKNIIEQHPEYNRKEKIKTEPVSSYIKYYKKFKKTYPVL LQLESILLKSKGIPDVGVTIESMFLAELKNLLLTAGHDLDKMELPLKIELANGSEHFYGIGGKEHILTKDDLFLSDNIGI LSSILNGPDNRTAITKDTKNIMYFVYGPDKISEKQIQDHLNDIKHYISSAFPDLKVNSIDIF
Specific function: Unknown
COG id: COG3382
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25393; Mature: 25393
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEVSHKVKEIYPNIKFGVMVINITHSKPNKENFLVLKNSTIKNIIEQHPEYNRKEKIKT CCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCCEEEEECCHHHHHHHHCCCCCCHHHCCC EPVSSYIKYYKKFKKTYPVLLQLESILLKSKGIPDVGVTIESMFLAELKNLLLTAGHDLD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC KMELPLKIELANGSEHFYGIGGKEHILTKDDLFLSDNIGILSSILNGPDNRTAITKDTKN CCCCCEEEEEECCCCEEEECCCCCEEEECCCEEEECCHHHHHHHHCCCCCCCEEEECCCE IMYFVYGPDKISEKQIQDHLNDIKHYISSAFPDLKVNSIDIF EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECC >Mature Secondary Structure MLEVSHKVKEIYPNIKFGVMVINITHSKPNKENFLVLKNSTIKNIIEQHPEYNRKEKIKT CCCCHHHHHHHCCCCEEEEEEEEEECCCCCCCCEEEEECCHHHHHHHHCCCCCCHHHCCC EPVSSYIKYYKKFKKTYPVLLQLESILLKSKGIPDVGVTIESMFLAELKNLLLTAGHDLD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC KMELPLKIELANGSEHFYGIGGKEHILTKDDLFLSDNIGILSSILNGPDNRTAITKDTKN CCCCCEEEEEECCCCEEEECCCCCEEEECCCEEEECCHHHHHHHHCCCCCCCEEEECCCE IMYFVYGPDKISEKQIQDHLNDIKHYISSAFPDLKVNSIDIF EEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA