Click here to switch to the map view.

The map label for this gene is rhaR [H]

Identifier: 126700279

GI number: 126700279

Start: 3078230

End: 3079099

Strand: Direct

Name: rhaR [H]

Synonym: CD2665

Alternate gene names: 126700279

Gene position: 3078230-3079099 (Clockwise)

Preceding gene: 126700276

Following gene: 126700286

Centisome position: 71.75

GC content: 24.14

Gene sequence:

>870_bases
ATGGATAATAAAATCGGGTACTTAAACGATAACTTTAAAATATTTAATATTAGAGATAAAAAAGATATACAATTTGAATA
CCATAATCATGATTTTAATAAGATAATTATATTTATAAATGGAAATGTAACTTATTTTGTTGATGGTATTCCCTATAAAC
TAAAGCCTTGGGATATACTCTTTATCAGCAATAATGAAATCCATAAACCAGTTATAGATTCAAATGTCTTTTATGAGAGA
ATTGCAATATGGATTAGCCCAGAATTTATGAAAAAAAATAGTGATGCTAGTAGTGACTTAGAAAAATGTTTTAAAATAGC
TACAGAGAATAAATGCAATAGATTGCGTTTAAATATACATGATATTGAATCTATTAAGAGTTTTATTGAGCAAATAAATA
TTTCCGAATCCAATACTGAATTTGGAAATGAAATATTGAGAAATACATTATTTATACAACTTATGATATTCTTAAACAGA
ATTTTCCTAAAAAATGAAAATATGGAATCAACAGAAGATATTTTTTATGATGAAACTATTAAGAAAGTATTAAACTATAT
AAATTCAAATATAGATGATAAGCTTTCAATAGATAGCATATCGTCTGAATTTTTTATAAGTAAGTATTATCTTATGAGAA
AATTTAAATCTCATACTGGAACGTCTATACACAATTATATAGTTCAAAAAAGATTAATTTTGGCAAAGTCACTAATAACC
AATGGTCACCTTATGAGTGAAGTTTGTAATAAATGTGGATTCAACGATTATTCTAGTTTTGTAAGGGCATTTAAAAAAAA
CTATGGGGTATCTCCTAAAAATTATATAAACAATAAAAATCCTTTGGATATTACTCTTTTAGATGAATAG

Upstream 100 bases:

>100_bases
AATTTTTTACTATGTGAATGGTTAAAAATGCTTGAAACATTGCAAAAAATGCTCTATAATTTTCTATAATATAACTGAGG
AAAGGTCTTCTATAAAAACT

Downstream 100 bases:

>100_bases
ATAATTTATGTAAATTTTATTTTAATAAAACTTGAAGTATTAGTGTATTTATCTTACTAATACCTCAAGTTTTTTAATGT
TTTAAAATATATCAAAATAT

Product: AraC family transcription regulator

Products: NA

Alternate protein names: L-rhamnose operon transcriptional activator rhaR [H]

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MDNKIGYLNDNFKIFNIRDKKDIQFEYHNHDFNKIIIFINGNVTYFVDGIPYKLKPWDILFISNNEIHKPVIDSNVFYER
IAIWISPEFMKKNSDASSDLEKCFKIATENKCNRLRLNIHDIESIKSFIEQINISESNTEFGNEILRNTLFIQLMIFLNR
IFLKNENMESTEDIFYDETIKKVLNYINSNIDDKLSIDSISSEFFISKYYLMRKFKSHTGTSIHNYIVQKRLILAKSLIT
NGHLMSEVCNKCGFNDYSSFVRAFKKNYGVSPKNYINNKNPLDITLLDE

Sequences:

>Translated_289_residues
MDNKIGYLNDNFKIFNIRDKKDIQFEYHNHDFNKIIIFINGNVTYFVDGIPYKLKPWDILFISNNEIHKPVIDSNVFYER
IAIWISPEFMKKNSDASSDLEKCFKIATENKCNRLRLNIHDIESIKSFIEQINISESNTEFGNEILRNTLFIQLMIFLNR
IFLKNENMESTEDIFYDETIKKVLNYINSNIDDKLSIDSISSEFFISKYYLMRKFKSHTGTSIHNYIVQKRLILAKSLIT
NGHLMSEVCNKCGFNDYSSFVRAFKKNYGVSPKNYINNKNPLDITLLDE
>Mature_289_residues
MDNKIGYLNDNFKIFNIRDKKDIQFEYHNHDFNKIIIFINGNVTYFVDGIPYKLKPWDILFISNNEIHKPVIDSNVFYER
IAIWISPEFMKKNSDASSDLEKCFKIATENKCNRLRLNIHDIESIKSFIEQINISESNTEFGNEILRNTLFIQLMIFLNR
IFLKNENMESTEDIFYDETIKKVLNYINSNIDDKLSIDSISSEFFISKYYLMRKFKSHTGTSIHNYIVQKRLILAKSLIT
NGHLMSEVCNKCGFNDYSSFVRAFKKNYGVSPKNYINNKNPLDITLLDE

Specific function: Activates expression of the rhaSR operon in response to L-rhamnose [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI171474011, Length=284, Percent_Identity=23.2394366197183, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790339, Length=261, Percent_Identity=21.455938697318, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34097; Mature: 34097

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNKIGYLNDNFKIFNIRDKKDIQFEYHNHDFNKIIIFINGNVTYFVDGIPYKLKPWDIL
CCCCCEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCEEEEECCCCCEECCEEEE
FISNNEIHKPVIDSNVFYERIAIWISPEFMKKNSDASSDLEKCFKIATENKCNRLRLNIH
EEECCCCCCCCCCCCHHEEHEEEEECHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEHH
DIESIKSFIEQINISESNTEFGNEILRNTLFIQLMIFLNRIFLKNENMESTEDIFYDETI
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
KKVLNYINSNIDDKLSIDSISSEFFISKYYLMRKFKSHTGTSIHNYIVQKRLILAKSLIT
HHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
NGHLMSEVCNKCGFNDYSSFVRAFKKNYGVSPKNYINNKNPLDITLLDE
CCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEECC
>Mature Secondary Structure
MDNKIGYLNDNFKIFNIRDKKDIQFEYHNHDFNKIIIFINGNVTYFVDGIPYKLKPWDIL
CCCCCEEECCCEEEEEECCCCCEEEEEECCCCEEEEEEEECCEEEEECCCCCEECCEEEE
FISNNEIHKPVIDSNVFYERIAIWISPEFMKKNSDASSDLEKCFKIATENKCNRLRLNIH
EEECCCCCCCCCCCCHHEEHEEEEECHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEHH
DIESIKSFIEQINISESNTEFGNEILRNTLFIQLMIFLNRIFLKNENMESTEDIFYDETI
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
KKVLNYINSNIDDKLSIDSISSEFFISKYYLMRKFKSHTGTSIHNYIVQKRLILAKSLIT
HHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
NGHLMSEVCNKCGFNDYSSFVRAFKKNYGVSPKNYINNKNPLDITLLDE
CCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA