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The map label for this gene is ycnC [H]

Identifier: 126700121

GI number: 126700121

Start: 2892618

End: 2893508

Strand: Direct

Name: ycnC [H]

Synonym: CD2505

Alternate gene names: 126700121

Gene position: 2892618-2893508 (Clockwise)

Preceding gene: 126700118

Following gene: 126700122

Centisome position: 67.42

GC content: 25.14

Gene sequence:

>891_bases
GTGACAGAAAAACAAAGGCTCATTATAACTATTGCACAAAAAATTTTTGACCAAAAGGGTTTTCAAAATACTTCAATATC
GGATGTTGTAAAAGAGTGTAAAATGTCTAAAGCTACTTTTTACAAGCATTTTGAAACTAAGGAAAGTTTTATCTGCGAAA
TAATCAATTATTATGATGAAAAGTTTTTAGAAATTATACATTCCATAAATGAAAATAATGACATTCCATCATCAGAAAAG
TTAAACAGAAAGATAATTGCTGTATGGAAAAATATTTTTTCTAGAACTACCATAAATACCTATATAAGAGAAAACTTTTC
TGAAGAACAACGTAAGGCTACAAGTAAATTGCAAACAAAATCACGAGCTAACTTATTGAATGAATACAAATTAAGCTTAT
TTGATAACTATGGTGATAAAATCGAAAAAATCATATTTGATTTAGTTTTCTTATTGGATGCTTTAATTCATCAGTTTATA
TACATTATTCATGTACAAAAAAGAGAAATAAATGTATACTTTATTGCCAAATTTACTATACAAATTCTAGATTTAGTTGT
AGAAAATATGGATAATCTAAATCCTTTAATTGAAAAATCAATGTTTTTACATAAACAAGAAGATGAAGTTTACTTTTCCC
TTCATAATAAATCGCTATTTTTTAAAACGATACAAGATATAGAAGAACTAATCAAAACTGATACTTCTCTCCTTGAAAAT
CCTAAATTACTAGAAGCAATAAAAAAATTATACGTCGAGGGAAAAAATCAACAATATGATTCTTTAATTATGGATGCAAT
GATTACATATTTAGAAAAAGAAGACACTTTAAGACCAAAAGTACTTTTATTGAACAGCATTAAAAATCAATTAAAAAAGG
AGACGTTATAA

Upstream 100 bases:

>100_bases
CTATATATTGATTTTTTTTCCAAATGATGTATAATATATTTATCAAAACTTGTAGGTACTATATAGTACTAAACGTTTTT
GCGTGAAAGGAGATAATAAA

Downstream 100 bases:

>100_bases
ATTATGGAAACCCAAAGTAACAATAAAAAAGGAAATTTAATAATAGCAATTGTAATGACTGGTGCTTTTATAAGTTCTCT
CAGTCAAACACTATTGTCAA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MTEKQRLIITIAQKIFDQKGFQNTSISDVVKECKMSKATFYKHFETKESFICEIINYYDEKFLEIIHSINENNDIPSSEK
LNRKIIAVWKNIFSRTTINTYIRENFSEEQRKATSKLQTKSRANLLNEYKLSLFDNYGDKIEKIIFDLVFLLDALIHQFI
YIIHVQKREINVYFIAKFTIQILDLVVENMDNLNPLIEKSMFLHKQEDEVYFSLHNKSLFFKTIQDIEELIKTDTSLLEN
PKLLEAIKKLYVEGKNQQYDSLIMDAMITYLEKEDTLRPKVLLLNSIKNQLKKETL

Sequences:

>Translated_296_residues
MTEKQRLIITIAQKIFDQKGFQNTSISDVVKECKMSKATFYKHFETKESFICEIINYYDEKFLEIIHSINENNDIPSSEK
LNRKIIAVWKNIFSRTTINTYIRENFSEEQRKATSKLQTKSRANLLNEYKLSLFDNYGDKIEKIIFDLVFLLDALIHQFI
YIIHVQKREINVYFIAKFTIQILDLVVENMDNLNPLIEKSMFLHKQEDEVYFSLHNKSLFFKTIQDIEELIKTDTSLLEN
PKLLEAIKKLYVEGKNQQYDSLIMDAMITYLEKEDTLRPKVLLLNSIKNQLKKETL
>Mature_295_residues
TEKQRLIITIAQKIFDQKGFQNTSISDVVKECKMSKATFYKHFETKESFICEIINYYDEKFLEIIHSINENNDIPSSEKL
NRKIIAVWKNIFSRTTINTYIRENFSEEQRKATSKLQTKSRANLLNEYKLSLFDNYGDKIEKIIFDLVFLLDALIHQFIY
IIHVQKREINVYFIAKFTIQILDLVVENMDNLNPLIEKSMFLHKQEDEVYFSLHNKSLFFKTIQDIEELIKTDTSLLENP
KLLEAIKKLYVEGKNQQYDSLIMDAMITYLEKEDTLRPKVLLLNSIKNQLKKETL

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 35137; Mature: 35006

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEKQRLIITIAQKIFDQKGFQNTSISDVVKECKMSKATFYKHFETKESFICEIINYYDE
CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFLEIIHSINENNDIPSSEKLNRKIIAVWKNIFSRTTINTYIRENFSEEQRKATSKLQTK
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
SRANLLNEYKLSLFDNYGDKIEKIIFDLVFLLDALIHQFIYIIHVQKREINVYFIAKFTI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECEEEEEEHHHHHH
QILDLVVENMDNLNPLIEKSMFLHKQEDEVYFSLHNKSLFFKTIQDIEELIKTDTSLLEN
HHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCC
PKLLEAIKKLYVEGKNQQYDSLIMDAMITYLEKEDTLRPKVLLLNSIKNQLKKETL
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TEKQRLIITIAQKIFDQKGFQNTSISDVVKECKMSKATFYKHFETKESFICEIINYYDE
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFLEIIHSINENNDIPSSEKLNRKIIAVWKNIFSRTTINTYIRENFSEEQRKATSKLQTK
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
SRANLLNEYKLSLFDNYGDKIEKIIFDLVFLLDALIHQFIYIIHVQKREINVYFIAKFTI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECEEEEEEHHHHHH
QILDLVVENMDNLNPLIEKSMFLHKQEDEVYFSLHNKSLFFKTIQDIEELIKTDTSLLEN
HHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCC
PKLLEAIKKLYVEGKNQQYDSLIMDAMITYLEKEDTLRPKVLLLNSIKNQLKKETL
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]