Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is yueF [H]

Identifier: 126699868

GI number: 126699868

Start: 2607067

End: 2608161

Strand: Direct

Name: yueF [H]

Synonym: CD2250

Alternate gene names: 126699868

Gene position: 2607067-2608161 (Clockwise)

Preceding gene: 126699861

Following gene: 126699869

Centisome position: 60.77

GC content: 27.76

Gene sequence:

>1095_bases
TTGCAAGATAAAAAAATTTATCTAAATATTGTACTCACTGTAGTTGTTTCATATATCTTGATTAAAGTTATTGATAATTA
CAAATATTTTTTTGGAGTGATAAGTTTATTAATGTCACTACTAACACCATTTATAATAGCATTTGTATTAGCATATATAT
TCAACCCACTAGTAAAGTTCTTAGAAAGCAAATTAAATTTTAAGAGAATATATTCGTTACTTCTTACTTATGGTGTACTC
ATAGTTATACTAATTTCCTTTATATTATTTACAGTTCCATCCATAGTAAATAGTTTAGCTGATTTAGTTGCTCAAATTCC
TACATACATAGATAAAACAGAGCAATTCTTATTCGACTTAGGTAAGAGTTTACAATCAGTTGACCCTAATACATTAAAAG
AGTATGGTGACAAAATTATGAGTGTAATGCCTAAATTTAGTAACTTGCTTATTGGTTCACTTGGTGGGATATTTAGCACT
ACATTTTCAGTTGGAAAATTTATAGTACAATTTCTTTTAGGTTTTATAATTTGTTTCTATATATTATTAGAAAAAGAAAA
ATTCTTACTGTTTACAAAAAAAGTAGTTTATATTTCCTTAGGTAAAAAATATGGAGACTTTATAATAGAACTATGTCAAA
GCTTAAATTTAAATATTGGTAAATACTTTACAGGTAAGATTTTAGATTCTTTTATAGTTGGAGTACTTTCTGGAATTGGT
CTTTACTTTTTAAAATCTGAATATGCACTATTATTTGGTACACTTATGGGTGTCATGAATATGGTTCCATATTTTGGTCC
AGTAATAGGTATGGCACCAGTTGTAATAATTAATTTATTCTCCAATCCAACAATTGCTTTAACTTCTTTAATTTACTTAA
TAATAATTCAACAAGTTGAAGTTACATTTATAGAGCCAAAAATCGTAGGTGGACAACTAGGTCTTAGCCCATTCTTTACA
ATCCTAGCAGTTACTGTTGGTGGAGGATTCTTTGGTATACCTGGTATGATTCTATCTGCTCCTGTGATGGGCGTTATAAA
GATATACTTCTGTGAGTTTGTAAATCGTAGACATGATAAAATACAAATGGAATAA

Upstream 100 bases:

>100_bases
ATTAATACTGCTTTTTATTGTATAATAAGCTATAAATATTAACTTTAACTTAGATTTAAGTATATCTAAATTTAATAAAT
ATAAGAAAGGTTGTGTTATT

Downstream 100 bases:

>100_bases
AAATACAATTTAATTACGATTTTGTAATCAAAAGTTACAGCTGTGTAACTGTAATATTATTCTCTTTAATGGTAATATTT
AATTATAGGAAACATACAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MQDKKIYLNIVLTVVVSYILIKVIDNYKYFFGVISLLMSLLTPFIIAFVLAYIFNPLVKFLESKLNFKRIYSLLLTYGVL
IVILISFILFTVPSIVNSLADLVAQIPTYIDKTEQFLFDLGKSLQSVDPNTLKEYGDKIMSVMPKFSNLLIGSLGGIFST
TFSVGKFIVQFLLGFIICFYILLEKEKFLLFTKKVVYISLGKKYGDFIIELCQSLNLNIGKYFTGKILDSFIVGVLSGIG
LYFLKSEYALLFGTLMGVMNMVPYFGPVIGMAPVVIINLFSNPTIALTSLIYLIIIQQVEVTFIEPKIVGGQLGLSPFFT
ILAVTVGGGFFGIPGMILSAPVMGVIKIYFCEFVNRRHDKIQME

Sequences:

>Translated_364_residues
MQDKKIYLNIVLTVVVSYILIKVIDNYKYFFGVISLLMSLLTPFIIAFVLAYIFNPLVKFLESKLNFKRIYSLLLTYGVL
IVILISFILFTVPSIVNSLADLVAQIPTYIDKTEQFLFDLGKSLQSVDPNTLKEYGDKIMSVMPKFSNLLIGSLGGIFST
TFSVGKFIVQFLLGFIICFYILLEKEKFLLFTKKVVYISLGKKYGDFIIELCQSLNLNIGKYFTGKILDSFIVGVLSGIG
LYFLKSEYALLFGTLMGVMNMVPYFGPVIGMAPVVIINLFSNPTIALTSLIYLIIIQQVEVTFIEPKIVGGQLGLSPFFT
ILAVTVGGGFFGIPGMILSAPVMGVIKIYFCEFVNRRHDKIQME
>Mature_364_residues
MQDKKIYLNIVLTVVVSYILIKVIDNYKYFFGVISLLMSLLTPFIIAFVLAYIFNPLVKFLESKLNFKRIYSLLLTYGVL
IVILISFILFTVPSIVNSLADLVAQIPTYIDKTEQFLFDLGKSLQSVDPNTLKEYGDKIMSVMPKFSNLLIGSLGGIFST
TFSVGKFIVQFLLGFIICFYILLEKEKFLLFTKKVVYISLGKKYGDFIIELCQSLNLNIGKYFTGKILDSFIVGVLSGIG
LYFLKSEYALLFGTLMGVMNMVPYFGPVIGMAPVVIINLFSNPTIALTSLIYLIIIQQVEVTFIEPKIVGGQLGLSPFFT
ILAVTVGGGFFGIPGMILSAPVMGVIKIYFCEFVNRRHDKIQME

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=334, Percent_Identity=24.251497005988, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 40781; Mature: 40781

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDKKIYLNIVLTVVVSYILIKVIDNYKYFFGVISLLMSLLTPFIIAFVLAYIFNPLVKF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LESKLNFKRIYSLLLTYGVLIVILISFILFTVPSIVNSLADLVAQIPTYIDKTEQFLFDL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GKSLQSVDPNTLKEYGDKIMSVMPKFSNLLIGSLGGIFSTTFSVGKFIVQFLLGFIICFY
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLEKEKFLLFTKKVVYISLGKKYGDFIIELCQSLNLNIGKYFTGKILDSFIVGVLSGIG
HHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LYFLKSEYALLFGTLMGVMNMVPYFGPVIGMAPVVIINLFSNPTIALTSLIYLIIIQQVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VTFIEPKIVGGQLGLSPFFTILAVTVGGGFFGIPGMILSAPVMGVIKIYFCEFVNRRHDK
HEEECCEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHC
IQME
CCCC
>Mature Secondary Structure
MQDKKIYLNIVLTVVVSYILIKVIDNYKYFFGVISLLMSLLTPFIIAFVLAYIFNPLVKF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LESKLNFKRIYSLLLTYGVLIVILISFILFTVPSIVNSLADLVAQIPTYIDKTEQFLFDL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GKSLQSVDPNTLKEYGDKIMSVMPKFSNLLIGSLGGIFSTTFSVGKFIVQFLLGFIICFY
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLEKEKFLLFTKKVVYISLGKKYGDFIIELCQSLNLNIGKYFTGKILDSFIVGVLSGIG
HHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LYFLKSEYALLFGTLMGVMNMVPYFGPVIGMAPVVIINLFSNPTIALTSLIYLIIIQQVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VTFIEPKIVGGQLGLSPFFTILAVTVGGGFFGIPGMILSAPVMGVIKIYFCEFVNRRHDK
HEEECCEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHC
IQME
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]