| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is yueF [H]
Identifier: 126699868
GI number: 126699868
Start: 2607067
End: 2608161
Strand: Direct
Name: yueF [H]
Synonym: CD2250
Alternate gene names: 126699868
Gene position: 2607067-2608161 (Clockwise)
Preceding gene: 126699861
Following gene: 126699869
Centisome position: 60.77
GC content: 27.76
Gene sequence:
>1095_bases TTGCAAGATAAAAAAATTTATCTAAATATTGTACTCACTGTAGTTGTTTCATATATCTTGATTAAAGTTATTGATAATTA CAAATATTTTTTTGGAGTGATAAGTTTATTAATGTCACTACTAACACCATTTATAATAGCATTTGTATTAGCATATATAT TCAACCCACTAGTAAAGTTCTTAGAAAGCAAATTAAATTTTAAGAGAATATATTCGTTACTTCTTACTTATGGTGTACTC ATAGTTATACTAATTTCCTTTATATTATTTACAGTTCCATCCATAGTAAATAGTTTAGCTGATTTAGTTGCTCAAATTCC TACATACATAGATAAAACAGAGCAATTCTTATTCGACTTAGGTAAGAGTTTACAATCAGTTGACCCTAATACATTAAAAG AGTATGGTGACAAAATTATGAGTGTAATGCCTAAATTTAGTAACTTGCTTATTGGTTCACTTGGTGGGATATTTAGCACT ACATTTTCAGTTGGAAAATTTATAGTACAATTTCTTTTAGGTTTTATAATTTGTTTCTATATATTATTAGAAAAAGAAAA ATTCTTACTGTTTACAAAAAAAGTAGTTTATATTTCCTTAGGTAAAAAATATGGAGACTTTATAATAGAACTATGTCAAA GCTTAAATTTAAATATTGGTAAATACTTTACAGGTAAGATTTTAGATTCTTTTATAGTTGGAGTACTTTCTGGAATTGGT CTTTACTTTTTAAAATCTGAATATGCACTATTATTTGGTACACTTATGGGTGTCATGAATATGGTTCCATATTTTGGTCC AGTAATAGGTATGGCACCAGTTGTAATAATTAATTTATTCTCCAATCCAACAATTGCTTTAACTTCTTTAATTTACTTAA TAATAATTCAACAAGTTGAAGTTACATTTATAGAGCCAAAAATCGTAGGTGGACAACTAGGTCTTAGCCCATTCTTTACA ATCCTAGCAGTTACTGTTGGTGGAGGATTCTTTGGTATACCTGGTATGATTCTATCTGCTCCTGTGATGGGCGTTATAAA GATATACTTCTGTGAGTTTGTAAATCGTAGACATGATAAAATACAAATGGAATAA
Upstream 100 bases:
>100_bases ATTAATACTGCTTTTTATTGTATAATAAGCTATAAATATTAACTTTAACTTAGATTTAAGTATATCTAAATTTAATAAAT ATAAGAAAGGTTGTGTTATT
Downstream 100 bases:
>100_bases AAATACAATTTAATTACGATTTTGTAATCAAAAGTTACAGCTGTGTAACTGTAATATTATTCTCTTTAATGGTAATATTT AATTATAGGAAACATACAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 364; Mature: 364
Protein sequence:
>364_residues MQDKKIYLNIVLTVVVSYILIKVIDNYKYFFGVISLLMSLLTPFIIAFVLAYIFNPLVKFLESKLNFKRIYSLLLTYGVL IVILISFILFTVPSIVNSLADLVAQIPTYIDKTEQFLFDLGKSLQSVDPNTLKEYGDKIMSVMPKFSNLLIGSLGGIFST TFSVGKFIVQFLLGFIICFYILLEKEKFLLFTKKVVYISLGKKYGDFIIELCQSLNLNIGKYFTGKILDSFIVGVLSGIG LYFLKSEYALLFGTLMGVMNMVPYFGPVIGMAPVVIINLFSNPTIALTSLIYLIIIQQVEVTFIEPKIVGGQLGLSPFFT ILAVTVGGGFFGIPGMILSAPVMGVIKIYFCEFVNRRHDKIQME
Sequences:
>Translated_364_residues MQDKKIYLNIVLTVVVSYILIKVIDNYKYFFGVISLLMSLLTPFIIAFVLAYIFNPLVKFLESKLNFKRIYSLLLTYGVL IVILISFILFTVPSIVNSLADLVAQIPTYIDKTEQFLFDLGKSLQSVDPNTLKEYGDKIMSVMPKFSNLLIGSLGGIFST TFSVGKFIVQFLLGFIICFYILLEKEKFLLFTKKVVYISLGKKYGDFIIELCQSLNLNIGKYFTGKILDSFIVGVLSGIG LYFLKSEYALLFGTLMGVMNMVPYFGPVIGMAPVVIINLFSNPTIALTSLIYLIIIQQVEVTFIEPKIVGGQLGLSPFFT ILAVTVGGGFFGIPGMILSAPVMGVIKIYFCEFVNRRHDKIQME >Mature_364_residues MQDKKIYLNIVLTVVVSYILIKVIDNYKYFFGVISLLMSLLTPFIIAFVLAYIFNPLVKFLESKLNFKRIYSLLLTYGVL IVILISFILFTVPSIVNSLADLVAQIPTYIDKTEQFLFDLGKSLQSVDPNTLKEYGDKIMSVMPKFSNLLIGSLGGIFST TFSVGKFIVQFLLGFIICFYILLEKEKFLLFTKKVVYISLGKKYGDFIIELCQSLNLNIGKYFTGKILDSFIVGVLSGIG LYFLKSEYALLFGTLMGVMNMVPYFGPVIGMAPVVIINLFSNPTIALTSLIYLIIIQQVEVTFIEPKIVGGQLGLSPFFT ILAVTVGGGFFGIPGMILSAPVMGVIKIYFCEFVNRRHDKIQME
Specific function: Unknown
COG id: COG0628
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0118 (perM) family [H]
Homologues:
Organism=Escherichia coli, GI1788838, Length=334, Percent_Identity=24.251497005988, Blast_Score=83, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002549 [H]
Pfam domain/function: PF01594 UPF0118 [H]
EC number: NA
Molecular weight: Translated: 40781; Mature: 40781
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDKKIYLNIVLTVVVSYILIKVIDNYKYFFGVISLLMSLLTPFIIAFVLAYIFNPLVKF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LESKLNFKRIYSLLLTYGVLIVILISFILFTVPSIVNSLADLVAQIPTYIDKTEQFLFDL HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GKSLQSVDPNTLKEYGDKIMSVMPKFSNLLIGSLGGIFSTTFSVGKFIVQFLLGFIICFY HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILLEKEKFLLFTKKVVYISLGKKYGDFIIELCQSLNLNIGKYFTGKILDSFIVGVLSGIG HHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH LYFLKSEYALLFGTLMGVMNMVPYFGPVIGMAPVVIINLFSNPTIALTSLIYLIIIQQVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VTFIEPKIVGGQLGLSPFFTILAVTVGGGFFGIPGMILSAPVMGVIKIYFCEFVNRRHDK HEEECCEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHC IQME CCCC >Mature Secondary Structure MQDKKIYLNIVLTVVVSYILIKVIDNYKYFFGVISLLMSLLTPFIIAFVLAYIFNPLVKF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LESKLNFKRIYSLLLTYGVLIVILISFILFTVPSIVNSLADLVAQIPTYIDKTEQFLFDL HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GKSLQSVDPNTLKEYGDKIMSVMPKFSNLLIGSLGGIFSTTFSVGKFIVQFLLGFIICFY HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILLEKEKFLLFTKKVVYISLGKKYGDFIIELCQSLNLNIGKYFTGKILDSFIVGVLSGIG HHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH LYFLKSEYALLFGTLMGVMNMVPYFGPVIGMAPVVIINLFSNPTIALTSLIYLIIIQQVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VTFIEPKIVGGQLGLSPFFTILAVTVGGGFFGIPGMILSAPVMGVIKIYFCEFVNRRHDK HEEECCEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHC IQME CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]