| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699660
Identifier: 126699660
GI number: 126699660
Start: 2355598
End: 2356296
Strand: Direct
Name: 126699660
Synonym: CD2043
Alternate gene names: NA
Gene position: 2355598-2356296 (Clockwise)
Preceding gene: 126699658
Following gene: 126699661
Centisome position: 54.91
GC content: 31.33
Gene sequence:
>699_bases ATGGAAAAAAAATATTTCGAAATTCATGGAGTTCCTTCAATCATTTGGGGAAATCCTTCAAGTAAATTATATATTTACAT ACATGGACAATGTGGCAATAAAGAGGAGGCTGAAGCTTTTGCTAATATTGCAGTTCCACATGAGTGTCAAGTTTTAAGTG TTGATTTGCCTGAACATGGAGAACGTAAAAGAGAAAAAAATTCATTTAACCCATGGCATGTTGTTCCAGAATTAGTATCT ATTATGGAATATGCAAAGTGCCACTGGAATCAAATTTCGTTATATGCAAATAGCATTGGAGCATGGTTTAGTATGTTAAG CTTTGAAAAAGAGAACTTAAGAGAGTGTATTTTTGTATCTCCAATTCTAGATATGCAACAGCTCATTTCAAATATGATGC TTTGGGCAAATGTATCAGAAGAACAGCTTAAACATGAACTAATTATCCCAACTTCATTTGGGCATACTCTTTCATGGGAA TATCTACAATATGTAAAACAACATCCTATCACTCAATGGAATGTACCAACAAAAATATTATATGGTAAACATGATGAACT TACTGAAATCGGTGTTGTAGAGAAATTTGTAGAAAAGTTTAATTGCAACCTTACTATTATAGAAAATGGCAAACATTGGT TTAACACACCACAAGAATTAAATTCATTATATGAATGGTTAAATACTTTAGTTAAATAA
Upstream 100 bases:
>100_bases CTAATATAATTAGTATTATATTAAATTCTATATTACAACATTATTTTATAGTTTGATTAATTTAACAATCACTAATATAT CAAACTGAAAGGAGATTTTT
Downstream 100 bases:
>100_bases AAAATAATTATATTATTAATATGATTAAATTATTTATAAATGTTATTTAATTAATTTTATTTTAGCATTATTAAAATAAC TACATAAAGAATAAATTAGT
Product: hydrolase
Products: NA
Alternate protein names: Hydrolase; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Superfamily Hydrolase
Number of amino acids: Translated: 232; Mature: 232
Protein sequence:
>232_residues MEKKYFEIHGVPSIIWGNPSSKLYIYIHGQCGNKEEAEAFANIAVPHECQVLSVDLPEHGERKREKNSFNPWHVVPELVS IMEYAKCHWNQISLYANSIGAWFSMLSFEKENLRECIFVSPILDMQQLISNMMLWANVSEEQLKHELIIPTSFGHTLSWE YLQYVKQHPITQWNVPTKILYGKHDELTEIGVVEKFVEKFNCNLTIIENGKHWFNTPQELNSLYEWLNTLVK
Sequences:
>Translated_232_residues MEKKYFEIHGVPSIIWGNPSSKLYIYIHGQCGNKEEAEAFANIAVPHECQVLSVDLPEHGERKREKNSFNPWHVVPELVS IMEYAKCHWNQISLYANSIGAWFSMLSFEKENLRECIFVSPILDMQQLISNMMLWANVSEEQLKHELIIPTSFGHTLSWE YLQYVKQHPITQWNVPTKILYGKHDELTEIGVVEKFVEKFNCNLTIIENGKHWFNTPQELNSLYEWLNTLVK >Mature_232_residues MEKKYFEIHGVPSIIWGNPSSKLYIYIHGQCGNKEEAEAFANIAVPHECQVLSVDLPEHGERKREKNSFNPWHVVPELVS IMEYAKCHWNQISLYANSIGAWFSMLSFEKENLRECIFVSPILDMQQLISNMMLWANVSEEQLKHELIIPTSFGHTLSWE YLQYVKQHPITQWNVPTKILYGKHDELTEIGVVEKFVEKFNCNLTIIENGKHWFNTPQELNSLYEWLNTLVK
Specific function: Unknown
COG id: COG1073
COG function: function code R; Hydrolases of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27182; Mature: 27182
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKKYFEIHGVPSIIWGNPSSKLYIYIHGQCGNKEEAEAFANIAVPHECQVLSVDLPEHG CCCCEEEECCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCC ERKREKNSFNPWHVVPELVSIMEYAKCHWNQISLYANSIGAWFSMLSFEKENLRECIFVS HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHCHHHHHHHHHHH PILDMQQLISNMMLWANVSEEQLKHELIIPTSFGHTLSWEYLQYVKQHPITQWNVPTKIL HHHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEEEE YGKHDELTEIGVVEKFVEKFNCNLTIIENGKHWFNTPQELNSLYEWLNTLVK ECCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MEKKYFEIHGVPSIIWGNPSSKLYIYIHGQCGNKEEAEAFANIAVPHECQVLSVDLPEHG CCCCEEEECCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCCCC ERKREKNSFNPWHVVPELVSIMEYAKCHWNQISLYANSIGAWFSMLSFEKENLRECIFVS HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHCHHHHHHHHHHH PILDMQQLISNMMLWANVSEEQLKHELIIPTSFGHTLSWEYLQYVKQHPITQWNVPTKIL HHHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEEEE YGKHDELTEIGVVEKFVEKFNCNLTIIENGKHWFNTPQELNSLYEWLNTLVK ECCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA