| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699642
Identifier: 126699642
GI number: 126699642
Start: 2336655
End: 2337293
Strand: Direct
Name: 126699642
Synonym: CD2025
Alternate gene names: NA
Gene position: 2336655-2337293 (Clockwise)
Preceding gene: 126699641
Following gene: 126699643
Centisome position: 54.46
GC content: 23.0
Gene sequence:
>639_bases ATGAAAGGTCTAATTTTAAAAGATTTACTTAATTTGAAAGGAAATATAAAGTTTATACTTTTATTCATCATTATGTTTGG CTTTATGTCTTCTTTAGGAGATGGAAATGTTAATAACTTTATAGGTGTTATTATAGTTTTATGTACTACAATGATTGTTT CAACATTTTCATATGATGATTTGAATAAATGGGATAGTTATGTACTTACAATGCCTATTAATCGCAATGATATTGTATTA AGTAAATATTTAACTATGTTAATATTTAGCTTTATAGGTGTTCTTGTTTCACTTATTGTTAGTGTAACTATTGGTTATTT TAAAAATACACTTATATTAAATGAAACACTACTTATTAATGCACTAATCTTATCAATTTCAGTATGTTTTGGTAGCCTTA TTCTACCACTTATTTATAAATTTGGTACAGAAAGAGCTCGTTTATTAATGATTTTATGCTTTTTAGTTCCAACACTAGCT TTATTAGTTTTTAAAAGTATTTTAGAAAATATTAGTTCACCTATTTCTATAGAAATTATACTTAATACACTAGTATATTC TCTTCCATTTGTTGCTATTTTACTATTTGTGATTTCATATTTTATATCATCAAAAATCTATAGTAAAAAAGAAGTATAA
Upstream 100 bases:
>100_bases TTAAAGATAAACATAGATTTATCTCAAGACATCCAAACTGTATTGTTGATAATACGTCTATAGAAGAAATTATGTTATTT TATGTGAGAGGTGATAAATA
Downstream 100 bases:
>100_bases AATATACTATATATGTTTCTGTATTTAAGTATTTAAATAAAATACTATCGAGTTTATTTTGGTAGTATTTTATTTTTTAA TTATTAATCTCTACTAGGTA
Product: ABC transporter permease
Products: NA
Alternate protein names: ABC Transporter Permease
Number of amino acids: Translated: 212; Mature: 212
Protein sequence:
>212_residues MKGLILKDLLNLKGNIKFILLFIIMFGFMSSLGDGNVNNFIGVIIVLCTTMIVSTFSYDDLNKWDSYVLTMPINRNDIVL SKYLTMLIFSFIGVLVSLIVSVTIGYFKNTLILNETLLINALILSISVCFGSLILPLIYKFGTERARLLMILCFLVPTLA LLVFKSILENISSPISIEIILNTLVYSLPFVAILLFVISYFISSKIYSKKEV
Sequences:
>Translated_212_residues MKGLILKDLLNLKGNIKFILLFIIMFGFMSSLGDGNVNNFIGVIIVLCTTMIVSTFSYDDLNKWDSYVLTMPINRNDIVL SKYLTMLIFSFIGVLVSLIVSVTIGYFKNTLILNETLLINALILSISVCFGSLILPLIYKFGTERARLLMILCFLVPTLA LLVFKSILENISSPISIEIILNTLVYSLPFVAILLFVISYFISSKIYSKKEV >Mature_212_residues MKGLILKDLLNLKGNIKFILLFIIMFGFMSSLGDGNVNNFIGVIIVLCTTMIVSTFSYDDLNKWDSYVLTMPINRNDIVL SKYLTMLIFSFIGVLVSLIVSVTIGYFKNTLILNETLLINALILSISVCFGSLILPLIYKFGTERARLLMILCFLVPTLA LLVFKSILENISSPISIEIILNTLVYSLPFVAILLFVISYFISSKIYSKKEV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23806; Mature: 23806
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGLILKDLLNLKGNIKFILLFIIMFGFMSSLGDGNVNNFIGVIIVLCTTMIVSTFSYDD CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC LNKWDSYVLTMPINRNDIVLSKYLTMLIFSFIGVLVSLIVSVTIGYFKNTLILNETLLIN HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALILSISVCFGSLILPLIYKFGTERARLLMILCFLVPTLALLVFKSILENISSPISIEII HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH LNTLVYSLPFVAILLFVISYFISSKIYSKKEV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKGLILKDLLNLKGNIKFILLFIIMFGFMSSLGDGNVNNFIGVIIVLCTTMIVSTFSYDD CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC LNKWDSYVLTMPINRNDIVLSKYLTMLIFSFIGVLVSLIVSVTIGYFKNTLILNETLLIN HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALILSISVCFGSLILPLIYKFGTERARLLMILCFLVPTLALLVFKSILENISSPISIEII HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH LNTLVYSLPFVAILLFVISYFISSKIYSKKEV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA