Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is yebQ [H]

Identifier: 126699636

GI number: 126699636

Start: 2329848

End: 2331275

Strand: Direct

Name: yebQ [H]

Synonym: CD2019

Alternate gene names: 126699636

Gene position: 2329848-2331275 (Clockwise)

Preceding gene: 126699634

Following gene: 126699640

Centisome position: 54.31

GC content: 27.31

Gene sequence:

>1428_bases
ATGACAAACTCTTTTAAAAAAGATGATAATAGAAAAAAAATCACAGTTTTATTTGTAGTCATTGCCATGACTTTTATGGC
AACATTAGATTCTAGTATTATAAATGTTGCTCTCCCAGTTCTTGCAAGCAAGCTAAATGTATCTCTAGCATCTATTGAAT
GGGTAATAGCAAGTTACTCAATTATTATTTGTTCAACACTATTATTTTTTGGAAGACTTGGAGATATTATTGGTAAATCA
AGAGTATTTCAAGTAGGTACTATTCTCTTTACATCAGCTTCATTACTATGTGGATTAAGTAATTCTTTAACTTTACTTAT
AGTTTGCCGCTTTATTCAAGGAATAGGCGCTTCTGCCTACATGGCAAACAATCATGGAATTATCACAGAACTATTTCCAA
AAGAAAGCAGAGGAAAAGCCCTAGGGATTTTAGTTACTGCAGTTGCTATTGGAAATATGGTTGGACCATCTGTGGGAGGA
TTTATTTTGTCAATATTTGATTGGAATGTTATATTTTTTATAAATATTCCAATCGGTCTTATTGTAATCTTTTTAAATAC
AAAATTTCTTCCTAATAGTAAAAAATCTTCAGAAAATATGGATAAAACTGGTGCTATACTTCAATTTTTAGGAACAACAT
TATTTTTTAGTGCTCTAATTAGTGCTCAACAAACAGGATTACTAAATCCATATATATTAATTGCACTATTATTATCAATT
ATTTTTATTATATTATTTTTGATATTAGAAAAAAAACATCCTCAACCGCTTCTTGACCTTGAAATTTTTAGAAATTTTAA
ATTTTCATTGAATTTAATTTGTGCTCTTACATCATTCATTTGTATTGCATCATCAAGTATTTTAATTCCATTTTATTTAC
AAAGTACTATGAAACTTCCCCCTATTCAAGCAGGTTTATTTATGATACTATCACCTTTGATTTTAGCCATTTTTTCACCT
ATATTTGGGAATATATCAGATAAAATTAAGTCAGAAAAAATTATTTTAATTGGTCTTCTCGTTATGAGTTTTGGATTCTT
TCTAATGTCAAGATTGAAAGAAAGTTCTGCCCTTATTTTATTTGTAATTTATATATTGATAATATCAATAGGACAAGCTA
TATTTCAACCTGCTAACAATGCTTTGATAATGTCAAGCTGTTCTAGAAGTAAGCTAGGAGTTGTAGGAAGCATAAATTCC
CTTGTAAGAAATTTAGGACAAGTTATAGGTATTACTATTTCTACAACACTTTTATATAATTTTATGAGTATTAAAGCTGG
ATATAGGGTCAATGATTATGTGATTAATAATGATAAAATATTTGTATTTGGAATGAGAAATGTTTATATTATTGTTACAC
TTGTTTGCTTAATAGGTGCAATATTAATTGGCTTTTATTTATTTAAATATAATAAAAATGAACAATAG

Upstream 100 bases:

>100_bases
AGTTATTGTATTCATTATTTCATATCGCTATTATATAAAATGTAACTATCATTGTAAACATTAACATAATGCCAGTCATT
ATAATAAGGAGGTAATAAAA

Downstream 100 bases:

>100_bases
TTTTTATAATTATATTCAAATTATGATTATATTATAAGAAATTTACTAAAATACTTTCTTTTCCTATAGTTTATAAATAA
AAATCAGCTGAGCAAAATAT

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 474

Protein sequence:

>475_residues
MTNSFKKDDNRKKITVLFVVIAMTFMATLDSSIINVALPVLASKLNVSLASIEWVIASYSIIICSTLLFFGRLGDIIGKS
RVFQVGTILFTSASLLCGLSNSLTLLIVCRFIQGIGASAYMANNHGIITELFPKESRGKALGILVTAVAIGNMVGPSVGG
FILSIFDWNVIFFINIPIGLIVIFLNTKFLPNSKKSSENMDKTGAILQFLGTTLFFSALISAQQTGLLNPYILIALLLSI
IFIILFLILEKKHPQPLLDLEIFRNFKFSLNLICALTSFICIASSSILIPFYLQSTMKLPPIQAGLFMILSPLILAIFSP
IFGNISDKIKSEKIILIGLLVMSFGFFLMSRLKESSALILFVIYILIISIGQAIFQPANNALIMSSCSRSKLGVVGSINS
LVRNLGQVIGITISTTLLYNFMSIKAGYRVNDYVINNDKIFVFGMRNVYIIVTLVCLIGAILIGFYLFKYNKNEQ

Sequences:

>Translated_475_residues
MTNSFKKDDNRKKITVLFVVIAMTFMATLDSSIINVALPVLASKLNVSLASIEWVIASYSIIICSTLLFFGRLGDIIGKS
RVFQVGTILFTSASLLCGLSNSLTLLIVCRFIQGIGASAYMANNHGIITELFPKESRGKALGILVTAVAIGNMVGPSVGG
FILSIFDWNVIFFINIPIGLIVIFLNTKFLPNSKKSSENMDKTGAILQFLGTTLFFSALISAQQTGLLNPYILIALLLSI
IFIILFLILEKKHPQPLLDLEIFRNFKFSLNLICALTSFICIASSSILIPFYLQSTMKLPPIQAGLFMILSPLILAIFSP
IFGNISDKIKSEKIILIGLLVMSFGFFLMSRLKESSALILFVIYILIISIGQAIFQPANNALIMSSCSRSKLGVVGSINS
LVRNLGQVIGITISTTLLYNFMSIKAGYRVNDYVINNDKIFVFGMRNVYIIVTLVCLIGAILIGFYLFKYNKNEQ
>Mature_474_residues
TNSFKKDDNRKKITVLFVVIAMTFMATLDSSIINVALPVLASKLNVSLASIEWVIASYSIIICSTLLFFGRLGDIIGKSR
VFQVGTILFTSASLLCGLSNSLTLLIVCRFIQGIGASAYMANNHGIITELFPKESRGKALGILVTAVAIGNMVGPSVGGF
ILSIFDWNVIFFINIPIGLIVIFLNTKFLPNSKKSSENMDKTGAILQFLGTTLFFSALISAQQTGLLNPYILIALLLSII
FIILFLILEKKHPQPLLDLEIFRNFKFSLNLICALTSFICIASSSILIPFYLQSTMKLPPIQAGLFMILSPLILAIFSPI
FGNISDKIKSEKIILIGLLVMSFGFFLMSRLKESSALILFVIYILIISIGQAIFQPANNALIMSSCSRSKLGVVGSINSL
VRNLGQVIGITISTTLLYNFMSIKAGYRVNDYVINNDKIFVFGMRNVYIIVTLVCLIGAILIGFYLFKYNKNEQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]

Homologues:

Organism=Escherichia coli, GI87081983, Length=413, Percent_Identity=31.9612590799031, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1789042, Length=449, Percent_Identity=25.6124721603563, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1790195, Length=435, Percent_Identity=25.0574712643678, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1788710, Length=342, Percent_Identity=30.1169590643275, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1788392, Length=309, Percent_Identity=29.4498381877023, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790146, Length=168, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1788509, Length=171, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87082231, Length=133, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87082404, Length=134, Percent_Identity=28.3582089552239, Blast_Score=63, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6319770, Length=383, Percent_Identity=25.065274151436, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6325455, Length=151, Percent_Identity=30.4635761589404, Blast_Score=76, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322958, Length=212, Percent_Identity=26.8867924528302, Blast_Score=75, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6321663, Length=155, Percent_Identity=29.6774193548387, Blast_Score=70, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6323735, Length=459, Percent_Identity=21.7864923747277, Blast_Score=68, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6324954, Length=414, Percent_Identity=21.9806763285024, Blast_Score=67, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6321577, Length=110, Percent_Identity=32.7272727272727, Blast_Score=64, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6325414, Length=110, Percent_Identity=32.7272727272727, Blast_Score=63, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR001411 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 52217; Mature: 52085

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNSFKKDDNRKKITVLFVVIAMTFMATLDSSIINVALPVLASKLNVSLASIEWVIASYS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
IIICSTLLFFGRLGDIIGKSRVFQVGTILFTSASLLCGLSNSLTLLIVCRFIQGIGASAY
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEE
MANNHGIITELFPKESRGKALGILVTAVAIGNMVGPSVGGFILSIFDWNVIFFINIPIGL
EECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCHHH
IVIFLNTKFLPNSKKSSENMDKTGAILQFLGTTLFFSALISAQQTGLLNPYILIALLLSI
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IFIILFLILEKKHPQPLLDLEIFRNFKFSLNLICALTSFICIASSSILIPFYLQSTMKLP
HHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCCC
PIQAGLFMILSPLILAIFSPIFGNISDKIKSEKIILIGLLVMSFGFFLMSRLKESSALIL
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
FVIYILIISIGQAIFQPANNALIMSSCSRSKLGVVGSINSLVRNLGQVIGITISTTLLYN
HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHH
FMSIKAGYRVNDYVINNDKIFVFGMRNVYIIVTLVCLIGAILIGFYLFKYNKNEQ
HHHHCCCCEEEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TNSFKKDDNRKKITVLFVVIAMTFMATLDSSIINVALPVLASKLNVSLASIEWVIASYS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
IIICSTLLFFGRLGDIIGKSRVFQVGTILFTSASLLCGLSNSLTLLIVCRFIQGIGASAY
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEE
MANNHGIITELFPKESRGKALGILVTAVAIGNMVGPSVGGFILSIFDWNVIFFINIPIGL
EECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCHHH
IVIFLNTKFLPNSKKSSENMDKTGAILQFLGTTLFFSALISAQQTGLLNPYILIALLLSI
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IFIILFLILEKKHPQPLLDLEIFRNFKFSLNLICALTSFICIASSSILIPFYLQSTMKLP
HHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCCC
PIQAGLFMILSPLILAIFSPIFGNISDKIKSEKIILIGLLVMSFGFFLMSRLKESSALIL
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
FVIYILIISIGQAIFQPANNALIMSSCSRSKLGVVGSINSLVRNLGQVIGITISTTLLYN
HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHH
FMSIKAGYRVNDYVINNDKIFVFGMRNVYIIVTLVCLIGAILIGFYLFKYNKNEQ
HHHHCCCCEEEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]