| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is yebQ [H]
Identifier: 126699636
GI number: 126699636
Start: 2329848
End: 2331275
Strand: Direct
Name: yebQ [H]
Synonym: CD2019
Alternate gene names: 126699636
Gene position: 2329848-2331275 (Clockwise)
Preceding gene: 126699634
Following gene: 126699640
Centisome position: 54.31
GC content: 27.31
Gene sequence:
>1428_bases ATGACAAACTCTTTTAAAAAAGATGATAATAGAAAAAAAATCACAGTTTTATTTGTAGTCATTGCCATGACTTTTATGGC AACATTAGATTCTAGTATTATAAATGTTGCTCTCCCAGTTCTTGCAAGCAAGCTAAATGTATCTCTAGCATCTATTGAAT GGGTAATAGCAAGTTACTCAATTATTATTTGTTCAACACTATTATTTTTTGGAAGACTTGGAGATATTATTGGTAAATCA AGAGTATTTCAAGTAGGTACTATTCTCTTTACATCAGCTTCATTACTATGTGGATTAAGTAATTCTTTAACTTTACTTAT AGTTTGCCGCTTTATTCAAGGAATAGGCGCTTCTGCCTACATGGCAAACAATCATGGAATTATCACAGAACTATTTCCAA AAGAAAGCAGAGGAAAAGCCCTAGGGATTTTAGTTACTGCAGTTGCTATTGGAAATATGGTTGGACCATCTGTGGGAGGA TTTATTTTGTCAATATTTGATTGGAATGTTATATTTTTTATAAATATTCCAATCGGTCTTATTGTAATCTTTTTAAATAC AAAATTTCTTCCTAATAGTAAAAAATCTTCAGAAAATATGGATAAAACTGGTGCTATACTTCAATTTTTAGGAACAACAT TATTTTTTAGTGCTCTAATTAGTGCTCAACAAACAGGATTACTAAATCCATATATATTAATTGCACTATTATTATCAATT ATTTTTATTATATTATTTTTGATATTAGAAAAAAAACATCCTCAACCGCTTCTTGACCTTGAAATTTTTAGAAATTTTAA ATTTTCATTGAATTTAATTTGTGCTCTTACATCATTCATTTGTATTGCATCATCAAGTATTTTAATTCCATTTTATTTAC AAAGTACTATGAAACTTCCCCCTATTCAAGCAGGTTTATTTATGATACTATCACCTTTGATTTTAGCCATTTTTTCACCT ATATTTGGGAATATATCAGATAAAATTAAGTCAGAAAAAATTATTTTAATTGGTCTTCTCGTTATGAGTTTTGGATTCTT TCTAATGTCAAGATTGAAAGAAAGTTCTGCCCTTATTTTATTTGTAATTTATATATTGATAATATCAATAGGACAAGCTA TATTTCAACCTGCTAACAATGCTTTGATAATGTCAAGCTGTTCTAGAAGTAAGCTAGGAGTTGTAGGAAGCATAAATTCC CTTGTAAGAAATTTAGGACAAGTTATAGGTATTACTATTTCTACAACACTTTTATATAATTTTATGAGTATTAAAGCTGG ATATAGGGTCAATGATTATGTGATTAATAATGATAAAATATTTGTATTTGGAATGAGAAATGTTTATATTATTGTTACAC TTGTTTGCTTAATAGGTGCAATATTAATTGGCTTTTATTTATTTAAATATAATAAAAATGAACAATAG
Upstream 100 bases:
>100_bases AGTTATTGTATTCATTATTTCATATCGCTATTATATAAAATGTAACTATCATTGTAAACATTAACATAATGCCAGTCATT ATAATAAGGAGGTAATAAAA
Downstream 100 bases:
>100_bases TTTTTATAATTATATTCAAATTATGATTATATTATAAGAAATTTACTAAAATACTTTCTTTTCCTATAGTTTATAAATAA AAATCAGCTGAGCAAAATAT
Product: transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 475; Mature: 474
Protein sequence:
>475_residues MTNSFKKDDNRKKITVLFVVIAMTFMATLDSSIINVALPVLASKLNVSLASIEWVIASYSIIICSTLLFFGRLGDIIGKS RVFQVGTILFTSASLLCGLSNSLTLLIVCRFIQGIGASAYMANNHGIITELFPKESRGKALGILVTAVAIGNMVGPSVGG FILSIFDWNVIFFINIPIGLIVIFLNTKFLPNSKKSSENMDKTGAILQFLGTTLFFSALISAQQTGLLNPYILIALLLSI IFIILFLILEKKHPQPLLDLEIFRNFKFSLNLICALTSFICIASSSILIPFYLQSTMKLPPIQAGLFMILSPLILAIFSP IFGNISDKIKSEKIILIGLLVMSFGFFLMSRLKESSALILFVIYILIISIGQAIFQPANNALIMSSCSRSKLGVVGSINS LVRNLGQVIGITISTTLLYNFMSIKAGYRVNDYVINNDKIFVFGMRNVYIIVTLVCLIGAILIGFYLFKYNKNEQ
Sequences:
>Translated_475_residues MTNSFKKDDNRKKITVLFVVIAMTFMATLDSSIINVALPVLASKLNVSLASIEWVIASYSIIICSTLLFFGRLGDIIGKS RVFQVGTILFTSASLLCGLSNSLTLLIVCRFIQGIGASAYMANNHGIITELFPKESRGKALGILVTAVAIGNMVGPSVGG FILSIFDWNVIFFINIPIGLIVIFLNTKFLPNSKKSSENMDKTGAILQFLGTTLFFSALISAQQTGLLNPYILIALLLSI IFIILFLILEKKHPQPLLDLEIFRNFKFSLNLICALTSFICIASSSILIPFYLQSTMKLPPIQAGLFMILSPLILAIFSP IFGNISDKIKSEKIILIGLLVMSFGFFLMSRLKESSALILFVIYILIISIGQAIFQPANNALIMSSCSRSKLGVVGSINS LVRNLGQVIGITISTTLLYNFMSIKAGYRVNDYVINNDKIFVFGMRNVYIIVTLVCLIGAILIGFYLFKYNKNEQ >Mature_474_residues TNSFKKDDNRKKITVLFVVIAMTFMATLDSSIINVALPVLASKLNVSLASIEWVIASYSIIICSTLLFFGRLGDIIGKSR VFQVGTILFTSASLLCGLSNSLTLLIVCRFIQGIGASAYMANNHGIITELFPKESRGKALGILVTAVAIGNMVGPSVGGF ILSIFDWNVIFFINIPIGLIVIFLNTKFLPNSKKSSENMDKTGAILQFLGTTLFFSALISAQQTGLLNPYILIALLLSII FIILFLILEKKHPQPLLDLEIFRNFKFSLNLICALTSFICIASSSILIPFYLQSTMKLPPIQAGLFMILSPLILAIFSPI FGNISDKIKSEKIILIGLLVMSFGFFLMSRLKESSALILFVIYILIISIGQAIFQPANNALIMSSCSRSKLGVVGSINSL VRNLGQVIGITISTTLLYNFMSIKAGYRVNDYVINNDKIFVFGMRNVYIIVTLVCLIGAILIGFYLFKYNKNEQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=413, Percent_Identity=31.9612590799031, Blast_Score=206, Evalue=2e-54, Organism=Escherichia coli, GI1789042, Length=449, Percent_Identity=25.6124721603563, Blast_Score=145, Evalue=5e-36, Organism=Escherichia coli, GI1790195, Length=435, Percent_Identity=25.0574712643678, Blast_Score=142, Evalue=5e-35, Organism=Escherichia coli, GI1788710, Length=342, Percent_Identity=30.1169590643275, Blast_Score=128, Evalue=1e-30, Organism=Escherichia coli, GI1788392, Length=309, Percent_Identity=29.4498381877023, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1790146, Length=168, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=9e-14, Organism=Escherichia coli, GI1788509, Length=171, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI87082231, Length=133, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI87082404, Length=134, Percent_Identity=28.3582089552239, Blast_Score=63, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6319770, Length=383, Percent_Identity=25.065274151436, Blast_Score=79, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6325455, Length=151, Percent_Identity=30.4635761589404, Blast_Score=76, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6322958, Length=212, Percent_Identity=26.8867924528302, Blast_Score=75, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6321663, Length=155, Percent_Identity=29.6774193548387, Blast_Score=70, Evalue=6e-13, Organism=Saccharomyces cerevisiae, GI6323735, Length=459, Percent_Identity=21.7864923747277, Blast_Score=68, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6324954, Length=414, Percent_Identity=21.9806763285024, Blast_Score=67, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6321577, Length=110, Percent_Identity=32.7272727272727, Blast_Score=64, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6325414, Length=110, Percent_Identity=32.7272727272727, Blast_Score=63, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 52217; Mature: 52085
Theoretical pI: Translated: 10.07; Mature: 10.07
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNSFKKDDNRKKITVLFVVIAMTFMATLDSSIINVALPVLASKLNVSLASIEWVIASYS CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH IIICSTLLFFGRLGDIIGKSRVFQVGTILFTSASLLCGLSNSLTLLIVCRFIQGIGASAY HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEE MANNHGIITELFPKESRGKALGILVTAVAIGNMVGPSVGGFILSIFDWNVIFFINIPIGL EECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCHHH IVIFLNTKFLPNSKKSSENMDKTGAILQFLGTTLFFSALISAQQTGLLNPYILIALLLSI HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH IFIILFLILEKKHPQPLLDLEIFRNFKFSLNLICALTSFICIASSSILIPFYLQSTMKLP HHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCCC PIQAGLFMILSPLILAIFSPIFGNISDKIKSEKIILIGLLVMSFGFFLMSRLKESSALIL CHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH FVIYILIISIGQAIFQPANNALIMSSCSRSKLGVVGSINSLVRNLGQVIGITISTTLLYN HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHH FMSIKAGYRVNDYVINNDKIFVFGMRNVYIIVTLVCLIGAILIGFYLFKYNKNEQ HHHHCCCCEEEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TNSFKKDDNRKKITVLFVVIAMTFMATLDSSIINVALPVLASKLNVSLASIEWVIASYS CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH IIICSTLLFFGRLGDIIGKSRVFQVGTILFTSASLLCGLSNSLTLLIVCRFIQGIGASAY HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEE MANNHGIITELFPKESRGKALGILVTAVAIGNMVGPSVGGFILSIFDWNVIFFINIPIGL EECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCHHH IVIFLNTKFLPNSKKSSENMDKTGAILQFLGTTLFFSALISAQQTGLLNPYILIALLLSI HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH IFIILFLILEKKHPQPLLDLEIFRNFKFSLNLICALTSFICIASSSILIPFYLQSTMKLP HHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCCC PIQAGLFMILSPLILAIFSPIFGNISDKIKSEKIILIGLLVMSFGFFLMSRLKESSALIL CHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH FVIYILIISIGQAIFQPANNALIMSSCSRSKLGVVGSINSLVRNLGQVIGITISTTLLYN HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHH FMSIKAGYRVNDYVINNDKIFVFGMRNVYIIVTLVCLIGAILIGFYLFKYNKNEQ HHHHCCCCEEEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]