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The map label for this gene is 126699453

Identifier: 126699453

GI number: 126699453

Start: 2137462

End: 2137770

Strand: Direct

Name: 126699453

Synonym: CD1844A

Alternate gene names: NA

Gene position: 2137462-2137770 (Clockwise)

Preceding gene: 126699451

Following gene: 126699454

Centisome position: 49.82

GC content: 33.01

Gene sequence:

>309_bases
GTTGAGACGGTAGCATTATTGTCCAAACTTGGTGTCGATAAGCATATAGATGTTGAAATTAAGCTGGATGAGCTTGATTT
GACAAGTGCAGAGAGTAAAGCAACATACGCTCAAATCAAGGAGTATGTATTAGAAAAATTTGGACTAAAAGTTTCTACAC
TCTATATTGCACAAATTAAAAAGAAATGTGGGATTGAAATGAGAGAACATTATAATAAATCTAAAAAAGATAATCAGGCT
ATCCCACAGTGTACGCCTGAAAAAGAAGAAGCTATCATGGATGCTTTAAGACATTTTAAAATGATTTAG

Upstream 100 bases:

>100_bases
TACAGTTACATTAGATAATACTTGTGATAGCCCTTTAACTAATGTATTTTTTAGGGATTTAATTCCAAATGGTTTAGAGT
TTATACCTGGAACTGTAACG

Downstream 100 bases:

>100_bases
TAGAAATGGAGGGTATTTATGAGATGGATATTAAGAATTATCTTATTTCCAATTAGCTTGTTGTTAAGTATCCTCACTGC
AGTTCTTTCATTTTTACTTG

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
VETVALLSKLGVDKHIDVEIKLDELDLTSAESKATYAQIKEYVLEKFGLKVSTLYIAQIKKKCGIEMREHYNKSKKDNQA
IPQCTPEKEEAIMDALRHFKMI

Sequences:

>Translated_102_residues
VETVALLSKLGVDKHIDVEIKLDELDLTSAESKATYAQIKEYVLEKFGLKVSTLYIAQIKKKCGIEMREHYNKSKKDNQA
IPQCTPEKEEAIMDALRHFKMI
>Mature_102_residues
VETVALLSKLGVDKHIDVEIKLDELDLTSAESKATYAQIKEYVLEKFGLKVSTLYIAQIKKKCGIEMREHYNKSKKDNQA
IPQCTPEKEEAIMDALRHFKMI

Specific function: Unknown

COG id: COG2265

COG function: function code J; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRAM domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016027
- InterPro:   IPR001566
- InterPro:   IPR002792
- InterPro:   IPR010280 [H]

Pfam domain/function: PF05958 tRNA_U5-meth_tr [H]

EC number: NA

Molecular weight: Translated: 11683; Mature: 11683

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
VETVALLSKLGVDKHIDVEIKLDELDLTSAESKATYAQIKEYVLEKFGLKVSTLYIAQIK
CCHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
KKCGIEMREHYNKSKKDNQAIPQCTPEKEEAIMDALRHFKMI
HHHCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11463916 [H]