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The map label for this gene is yciR [C]

Identifier: 126699449

GI number: 126699449

Start: 2129428

End: 2130936

Strand: Direct

Name: yciR [C]

Synonym: CD1840

Alternate gene names: 126699449

Gene position: 2129428-2130936 (Clockwise)

Preceding gene: 126699448

Following gene: 126699450

Centisome position: 49.63

GC content: 24.52

Gene sequence:

>1509_bases
TTGCTAAAGAGAGTGAGGTGTAGCTATTTGAAAAAAAATAGATTAATAGCAAAGAATATATCAATAGCATTTATAGTACT
ATTCTTTTTTAGTGTATTTACATTCTTTTATGTAGGTAATATTAATAGAGTGTTAGAATATGAAACAAATGACATAATAA
CAGTTACAATTGCTGGATGGATTATACTTTCATTTTTATTTTTAGGTATTATAATTTACATATTATATTCAAAAGCAAAT
AGTCAAAAAACTATAGAAAAAGTAGCATATACGGATTTTGTAACAGGTTATTCCAACTGGAGAAAGTTTGAATTAGATGT
TACAAATTTATTAAAGAAAACATCACAAAATAATAAATATGCAATGGTCATATTCGATATTGATAAATTTAAAGCAATTA
ATGATATATATGGCCATAAAAAGGGAAATTTAATATTAAAAGATATTGCAGATACTTTAAATGAATTGACTGATATCAAT
GAAACTTTTGCTCGTGTAAGTGCTGATAATTTCAATATATTATTAACATATAACAAAAAAGAGGATATAATAAATATTAT
CAAAAAGATTATGGCAAATAATGAACTTGTAAACTTATCTTTTGGAATTTATGAAATCAAAGATAAGGATTTATCTGTAA
GTGTATATAGTGATAGAGCTTCACTTGCAAAATCATCAATAAAAAATAATAGTGATGTAAATTTTGCATTTTTTAATGAC
AAATTAAGAGAGAAATTATTATTTGAAGATAAGATAGAAAAAGAAATGGAATATGCTCTTGAAAGTGGGCAATTCGTAAT
GTATTTACAACCAAAATACAATATTAAATTAGATAAATTTTGTGGAAGTGAAGCCCTAGTCAGATGGCAATATACAGAAA
AAGAGGTCATATATCCAGGTGATTTTATTCCTATATTTGAAAAAAATGGATTTATTAGAAAGATTGATATGTACATATTA
GAACAAGCTTGTAAAGAAATCCGGTCTTTATTTGATAAAGGAATTTCACCTTTACCTATATCTGTAAACTTCTCAAGAGT
TGATTTTTTTAAAAAAGATTTTATTGAAAACATAGTAAATATATGTGATAGATATAAAATACCATATAGTTTAATAGAAA
TTGAAATTACTGAATCTAGTATGTTTGGAGATACTGATACTCTATTTAATGTTAGTAGAAACCTACAGGATATTGGCTTT
ATAGTTGCAATGGATGATTTTGGCTCTGGATATTCTTCTGTAAATATGCTTAAAAATATACCATTAAATGTAATAAAATT
AGATAGAGGATTTTTTGTTGATGATAAAGATGTTGATAAGAGTCAAATTGTTATAAAAAGCATAGTTTCTCTCATTAAGC
AATTAGGAATAAGGGTTGTTGCTGAAGGAATTGAAACAAGAAGTCAAATAGAAATGTTAAAAAAAGCAAATTGTGATATT
GTTCAAGGATATTATTTTTCAAAACCATTACCAATTAAAGAATTTGAAAAATTAGTCTATAAAATATAG

Upstream 100 bases:

>100_bases
TAATGATATTTATTTAAATACTCTTTATTAACAATTTATAAAACTTAATTGTAAAAAATACTTATTAATAGTAAAATAAA
GTGAATCAATTATATTATAA

Downstream 100 bases:

>100_bases
TCAGCGAGTCTTAAATGGGAGGTGGTGATTAAGTGATAAGAGCAAAATCGTTAAAAAATGTACTGAGTATTGTTTTAATA
TTTTTATTTACAATAATTTC

Product: signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MLKRVRCSYLKKNRLIAKNISIAFIVLFFFSVFTFFYVGNINRVLEYETNDIITVTIAGWIILSFLFLGIIIYILYSKAN
SQKTIEKVAYTDFVTGYSNWRKFELDVTNLLKKTSQNNKYAMVIFDIDKFKAINDIYGHKKGNLILKDIADTLNELTDIN
ETFARVSADNFNILLTYNKKEDIINIIKKIMANNELVNLSFGIYEIKDKDLSVSVYSDRASLAKSSIKNNSDVNFAFFND
KLREKLLFEDKIEKEMEYALESGQFVMYLQPKYNIKLDKFCGSEALVRWQYTEKEVIYPGDFIPIFEKNGFIRKIDMYIL
EQACKEIRSLFDKGISPLPISVNFSRVDFFKKDFIENIVNICDRYKIPYSLIEIEITESSMFGDTDTLFNVSRNLQDIGF
IVAMDDFGSGYSSVNMLKNIPLNVIKLDRGFFVDDKDVDKSQIVIKSIVSLIKQLGIRVVAEGIETRSQIEMLKKANCDI
VQGYYFSKPLPIKEFEKLVYKI

Sequences:

>Translated_502_residues
MLKRVRCSYLKKNRLIAKNISIAFIVLFFFSVFTFFYVGNINRVLEYETNDIITVTIAGWIILSFLFLGIIIYILYSKAN
SQKTIEKVAYTDFVTGYSNWRKFELDVTNLLKKTSQNNKYAMVIFDIDKFKAINDIYGHKKGNLILKDIADTLNELTDIN
ETFARVSADNFNILLTYNKKEDIINIIKKIMANNELVNLSFGIYEIKDKDLSVSVYSDRASLAKSSIKNNSDVNFAFFND
KLREKLLFEDKIEKEMEYALESGQFVMYLQPKYNIKLDKFCGSEALVRWQYTEKEVIYPGDFIPIFEKNGFIRKIDMYIL
EQACKEIRSLFDKGISPLPISVNFSRVDFFKKDFIENIVNICDRYKIPYSLIEIEITESSMFGDTDTLFNVSRNLQDIGF
IVAMDDFGSGYSSVNMLKNIPLNVIKLDRGFFVDDKDVDKSQIVIKSIVSLIKQLGIRVVAEGIETRSQIEMLKKANCDI
VQGYYFSKPLPIKEFEKLVYKI
>Mature_502_residues
MLKRVRCSYLKKNRLIAKNISIAFIVLFFFSVFTFFYVGNINRVLEYETNDIITVTIAGWIILSFLFLGIIIYILYSKAN
SQKTIEKVAYTDFVTGYSNWRKFELDVTNLLKKTSQNNKYAMVIFDIDKFKAINDIYGHKKGNLILKDIADTLNELTDIN
ETFARVSADNFNILLTYNKKEDIINIIKKIMANNELVNLSFGIYEIKDKDLSVSVYSDRASLAKSSIKNNSDVNFAFFND
KLREKLLFEDKIEKEMEYALESGQFVMYLQPKYNIKLDKFCGSEALVRWQYTEKEVIYPGDFIPIFEKNGFIRKIDMYIL
EQACKEIRSLFDKGISPLPISVNFSRVDFFKKDFIENIVNICDRYKIPYSLIEIEITESSMFGDTDTLFNVSRNLQDIGF
IVAMDDFGSGYSSVNMLKNIPLNVIKLDRGFFVDDKDVDKSQIVIKSIVSLIKQLGIRVVAEGIETRSQIEMLKKANCDI
VQGYYFSKPLPIKEFEKLVYKI

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=427, Percent_Identity=27.4004683840749, Blast_Score=188, Evalue=7e-49,
Organism=Escherichia coli, GI87081921, Length=432, Percent_Identity=26.8518518518519, Blast_Score=162, Evalue=6e-41,
Organism=Escherichia coli, GI226510982, Length=292, Percent_Identity=31.5068493150685, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1790496, Length=243, Percent_Identity=30.8641975308642, Blast_Score=149, Evalue=5e-37,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=28.9915966386555, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI87082096, Length=421, Percent_Identity=24.2280285035629, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87081980, Length=247, Percent_Identity=28.3400809716599, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1786507, Length=240, Percent_Identity=28.75, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1787055, Length=403, Percent_Identity=24.5657568238213, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI87081743, Length=249, Percent_Identity=28.5140562248996, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1788502, Length=325, Percent_Identity=24.3076923076923, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1788849, Length=280, Percent_Identity=25, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1788381, Length=439, Percent_Identity=20.501138952164, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87081977, Length=153, Percent_Identity=30.718954248366, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 58232; Mature: 58232

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRVRCSYLKKNRLIAKNISIAFIVLFFFSVFTFFYVGNINRVLEYETNDIITVTIAGW
CCCCHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEHHHH
IILSFLFLGIIIYILYSKANSQKTIEKVAYTDFVTGYSNWRKFELDVTNLLKKTSQNNKY
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHCCCCCCE
AMVIFDIDKFKAINDIYGHKKGNLILKDIADTLNELTDINETFARVSADNFNILLTYNKK
EEEEEECHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCH
EDIINIIKKIMANNELVNLSFGIYEIKDKDLSVSVYSDRASLAKSSIKNNSDVNFAFFND
HHHHHHHHHHHCCCCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHCCCCCCEEEEEECH
KLREKLLFEDKIEKEMEYALESGQFVMYLQPKYNIKLDKFCGSEALVRWQYTEKEVIYPG
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHCCCCCEEEEEECCCCEECCC
DFIPIFEKNGFIRKIDMYILEQACKEIRSLFDKGISPLPISVNFSRVDFFKKDFIENIVN
CEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHH
ICDRYKIPYSLIEIEITESSMFGDTDTLFNVSRNLQDIGFIVAMDDFGSGYSSVNMLKNI
HHHCCCCCEEEEEEEEECCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCC
PLNVIKLDRGFFVDDKDVDKSQIVIKSIVSLIKQLGIRVVAEGIETRSQIEMLKKANCDI
CCEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VQGYYFSKPLPIKEFEKLVYKI
EECEECCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MLKRVRCSYLKKNRLIAKNISIAFIVLFFFSVFTFFYVGNINRVLEYETNDIITVTIAGW
CCCCHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEHHHH
IILSFLFLGIIIYILYSKANSQKTIEKVAYTDFVTGYSNWRKFELDVTNLLKKTSQNNKY
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHCCCCCCE
AMVIFDIDKFKAINDIYGHKKGNLILKDIADTLNELTDINETFARVSADNFNILLTYNKK
EEEEEECHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCH
EDIINIIKKIMANNELVNLSFGIYEIKDKDLSVSVYSDRASLAKSSIKNNSDVNFAFFND
HHHHHHHHHHHCCCCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHCCCCCCEEEEEECH
KLREKLLFEDKIEKEMEYALESGQFVMYLQPKYNIKLDKFCGSEALVRWQYTEKEVIYPG
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHCCCCCEEEEEECCCCEECCC
DFIPIFEKNGFIRKIDMYILEQACKEIRSLFDKGISPLPISVNFSRVDFFKKDFIENIVN
CEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHH
ICDRYKIPYSLIEIEITESSMFGDTDTLFNVSRNLQDIGFIVAMDDFGSGYSSVNMLKNI
HHHCCCCCEEEEEEEEECCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHCC
PLNVIKLDRGFFVDDKDVDKSQIVIKSIVSLIKQLGIRVVAEGIETRSQIEMLKKANCDI
CCEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VQGYYFSKPLPIKEFEKLVYKI
EECEECCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]