| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is artQ [H]
Identifier: 126699384
GI number: 126699384
Start: 2056678
End: 2057289
Strand: Direct
Name: artQ [H]
Synonym: CD1775
Alternate gene names: 126699384
Gene position: 2056678-2057289 (Clockwise)
Preceding gene: 126699383
Following gene: 126699385
Centisome position: 47.94
GC content: 28.27
Gene sequence:
>612_bases ATGTTACAAGGTTTAGAGATAGTTATAGCAATGTTTTGTATAACATTGATAGTATCAATTCCATTGGGGATTGGAGTTGC ATTTTTAAGATTATCAAAGAATAAATTAGTAAGTGGTATTACACAATGTTATATATTGATAATGAGAGGTACACCTTTAC TTTTGCAAATGATAGTCATATTTTACGGATTACCTCTTTTAGGAATTGTATTTGACAGATTTACAGCTGGAGTAGTAGCT TTCTTCTTAAATTATGCAGCATATTTTGCAGAAATATTTAGAGGTGGAATACAGTCAATCGATAGAGGACAATATGAAGC TTCAAAAGTACTAGGATTTGATAAGTTTACTATGTATAAGAGAGTAATCTTTCCACAAGTTTTTAAAAGAATACTAGCAC CTATTTCAAATGAAGTAATCACATTAGTAAAAGATACATCTTTAGTATATATATTAGGATTAAATGATATTTTAAGAATA TCTCAAATAGCAATGAACAGGGAAGCAAGTCTGTTACCATTATTTGAGGCAGGAGCGATATATCTTATATTTGTAGCTAT ACTTACTAAGGGATTTGAATTACTTGAAAAAAAATATTCTTATTATAGATAA
Upstream 100 bases:
>100_bases ACATTAAAAGAAATGAAAAAAGATGGAACTTTTGACAAAATTTATGATAAGTGGTTTAAATAGAAGATAAGTTAGCTGTT AAGAAGGGGGCACTAAAGGC
Downstream 100 bases:
>100_bases AGTTACAATATTATAGGAGGAGGTTTTTTATATGTTGAAAATCAAAAACTTAAATAAATCATTTAAAAAAAATAGAGTAC TTAAAGATATTTCTTTTGAG
Product: amino acid ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 203; Mature: 203
Protein sequence:
>203_residues MLQGLEIVIAMFCITLIVSIPLGIGVAFLRLSKNKLVSGITQCYILIMRGTPLLLQMIVIFYGLPLLGIVFDRFTAGVVA FFLNYAAYFAEIFRGGIQSIDRGQYEASKVLGFDKFTMYKRVIFPQVFKRILAPISNEVITLVKDTSLVYILGLNDILRI SQIAMNREASLLPLFEAGAIYLIFVAILTKGFELLEKKYSYYR
Sequences:
>Translated_203_residues MLQGLEIVIAMFCITLIVSIPLGIGVAFLRLSKNKLVSGITQCYILIMRGTPLLLQMIVIFYGLPLLGIVFDRFTAGVVA FFLNYAAYFAEIFRGGIQSIDRGQYEASKVLGFDKFTMYKRVIFPQVFKRILAPISNEVITLVKDTSLVYILGLNDILRI SQIAMNREASLLPLFEAGAIYLIFVAILTKGFELLEKKYSYYR >Mature_203_residues MLQGLEIVIAMFCITLIVSIPLGIGVAFLRLSKNKLVSGITQCYILIMRGTPLLLQMIVIFYGLPLLGIVFDRFTAGVVA FFLNYAAYFAEIFRGGIQSIDRGQYEASKVLGFDKFTMYKRVIFPQVFKRILAPISNEVITLVKDTSLVYILGLNDILRI SQIAMNREASLLPLFEAGAIYLIFVAILTKGFELLEKKYSYYR
Specific function: Part of a binding-protein-dependent transport system for arginine. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1788226, Length=169, Percent_Identity=38.4615384615385, Blast_Score=123, Evalue=7e-30, Organism=Escherichia coli, GI1788646, Length=214, Percent_Identity=30.8411214953271, Blast_Score=108, Evalue=2e-25, Organism=Escherichia coli, GI1787030, Length=203, Percent_Identity=31.5270935960591, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787086, Length=208, Percent_Identity=30.2884615384615, Blast_Score=98, Evalue=3e-22, Organism=Escherichia coli, GI1788645, Length=209, Percent_Identity=31.5789473684211, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI1786873, Length=178, Percent_Identity=32.0224719101124, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI87082239, Length=207, Percent_Identity=32.3671497584541, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1787087, Length=202, Percent_Identity=27.7227722772277, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1786874, Length=168, Percent_Identity=27.3809523809524, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI48994930, Length=122, Percent_Identity=30.327868852459, Blast_Score=63, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 22905; Mature: 22905
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQGLEIVIAMFCITLIVSIPLGIGVAFLRLSKNKLVSGITQCYILIMRGTPLLLQMIVI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH FYGLPLLGIVFDRFTAGVVAFFLNYAAYFAEIFRGGIQSIDRGQYEASKVLGFDKFTMYK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHH RVIFPQVFKRILAPISNEVITLVKDTSLVYILGLNDILRISQIAMNREASLLPLFEAGAI HHHHHHHHHHHHHHHCHHHHHEEECCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHH YLIFVAILTKGFELLEKKYSYYR HHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLQGLEIVIAMFCITLIVSIPLGIGVAFLRLSKNKLVSGITQCYILIMRGTPLLLQMIVI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH FYGLPLLGIVFDRFTAGVVAFFLNYAAYFAEIFRGGIQSIDRGQYEASKVLGFDKFTMYK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHH RVIFPQVFKRILAPISNEVITLVKDTSLVYILGLNDILRISQIAMNREASLLPLFEAGAI HHHHHHHHHHHHHHHCHHHHHEEECCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHH YLIFVAILTKGFELLEKKYSYYR HHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]