| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126699341
Identifier: 126699341
GI number: 126699341
Start: 2008811
End: 2009431
Strand: Direct
Name: 126699341
Synonym: CD1734
Alternate gene names: NA
Gene position: 2008811-2009431 (Clockwise)
Preceding gene: 126699340
Following gene: 126699344
Centisome position: 46.82
GC content: 24.32
Gene sequence:
>621_bases ATGAATTATAATAGTAATAAAAATAAATATCTTTTAAAGGATATAAATTTAGATGATATTTTTATAGATAAGAATATTGT GCTAAAGTTTTTGGGGTATGGAAATAGAAAAGCTCCAGATACAATTAGTAAAATCGTTGAAAGAGAAATAAGAAATATAA ATGATATTTTAGATATCAAGATATATATAAGTGAAGTTGATATTAATAAAACACCTAAAGAATGTAAAAAAGCATTTGCT GTACTATATACAATAGGGGATAAAATTGATTTTAAGATGAATGACTATATGGAAAATTGCAATATGATGGCAGGGCTAGC ATTGGATAAAATAGGTATAGTATGTTTAGATTATATTAATGAGAAAATAAAAATGTATTTAAAAGGAAAGTATGATAGTC TCAAAATATCGCATGAAATATATCCAGGAGATAAAGATTTTGAAGTAGAGAGACAAAAGGATATTTATAACTATGTAAAA AATAAATATAATAGTATAGAAATAGAAATCAATGATTATCATCAACTATCCCCCATAAAAAGTGTTGCAATGCTTATTTT AATGGGGGATGAAGAAAATTTAGAATCAAGATGTAGTAAATGTCCTAGAAAATGCTTTTAG
Upstream 100 bases:
>100_bases TTTGGTTGTAACTGCTTAAATACCACTCCAGTAGAAAATTTACAAGCAGCTATAAAGGCAGGAAGAATTAGTTATAAAGA ATTAGATAGGATTGATATTG
Downstream 100 bases:
>100_bases ATAGTTTTCAAGAGTAAGATTTGTTTTGTGTATGAATAATTGCAATAATTTTTTTGGTCATTTTATGTATAAACTAAAAA AATTATTGCAAAGTAATATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 206; Mature: 206
Protein sequence:
>206_residues MNYNSNKNKYLLKDINLDDIFIDKNIVLKFLGYGNRKAPDTISKIVEREIRNINDILDIKIYISEVDINKTPKECKKAFA VLYTIGDKIDFKMNDYMENCNMMAGLALDKIGIVCLDYINEKIKMYLKGKYDSLKISHEIYPGDKDFEVERQKDIYNYVK NKYNSIEIEINDYHQLSPIKSVAMLILMGDEENLESRCSKCPRKCF
Sequences:
>Translated_206_residues MNYNSNKNKYLLKDINLDDIFIDKNIVLKFLGYGNRKAPDTISKIVEREIRNINDILDIKIYISEVDINKTPKECKKAFA VLYTIGDKIDFKMNDYMENCNMMAGLALDKIGIVCLDYINEKIKMYLKGKYDSLKISHEIYPGDKDFEVERQKDIYNYVK NKYNSIEIEINDYHQLSPIKSVAMLILMGDEENLESRCSKCPRKCF >Mature_206_residues MNYNSNKNKYLLKDINLDDIFIDKNIVLKFLGYGNRKAPDTISKIVEREIRNINDILDIKIYISEVDINKTPKECKKAFA VLYTIGDKIDFKMNDYMENCNMMAGLALDKIGIVCLDYINEKIKMYLKGKYDSLKISHEIYPGDKDFEVERQKDIYNYVK NKYNSIEIEINDYHQLSPIKSVAMLILMGDEENLESRCSKCPRKCF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24146; Mature: 24146
Theoretical pI: Translated: 7.20; Mature: 7.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYNSNKNKYLLKDINLDDIFIDKNIVLKFLGYGNRKAPDTISKIVEREIRNINDILDIK CCCCCCCCEEEEEECCCCEEEECHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCEEEEE IYISEVDINKTPKECKKAFAVLYTIGDKIDFKMNDYMENCNMMAGLALDKIGIVCLDYIN EEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHH EKIKMYLKGKYDSLKISHEIYPGDKDFEVERQKDIYNYVKNKYNSIEIEINDYHQLSPIK HHHEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHCCHHH SVAMLILMGDEENLESRCSKCPRKCF HEEEEEEECCCCCHHHHHHHCCCCCC >Mature Secondary Structure MNYNSNKNKYLLKDINLDDIFIDKNIVLKFLGYGNRKAPDTISKIVEREIRNINDILDIK CCCCCCCCEEEEEECCCCEEEECHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCEEEEE IYISEVDINKTPKECKKAFAVLYTIGDKIDFKMNDYMENCNMMAGLALDKIGIVCLDYIN EEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHH EKIKMYLKGKYDSLKISHEIYPGDKDFEVERQKDIYNYVKNKYNSIEIEINDYHQLSPIK HHHEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHCCHHH SVAMLILMGDEENLESRCSKCPRKCF HEEEEEEECCCCCHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA