Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is 126699127

Identifier: 126699127

GI number: 126699127

Start: 1765767

End: 1766681

Strand: Direct

Name: 126699127

Synonym: CD1523

Alternate gene names: NA

Gene position: 1765767-1766681 (Clockwise)

Preceding gene: 126699125

Following gene: 126699128

Centisome position: 41.16

GC content: 29.84

Gene sequence:

>915_bases
TTGAAAAAATACTTTGGAGAAATAGGACTAATATTTATAGCAATTATATGGGGAAGTGGCTTTGTAGCAACCCAATTTGC
ATTAGACGGTGGGCTTACACCTCTACAAATCATAACTTTAAGATTTTTCTTGGCAGCTATAATTATGAATTTACTGTTTT
TTAAACAGATTCGTGCCAATATGGGTAAAAAATTATTAAAAGCAGGAGGGATTTTAGGAATATTTTTATTTCTAGCATTC
ACAGTACAAACTATTGGACTTATGTACACTACACCATCTAAAAATGCGTTTATAACAGCAGCTAATGTTGTAATAGTTCC
ATTCATAGGATTTATACTTTATAGAAGAAAACTTGATAAAATAGGAATAATAAGTAGTTTGGTAGCTCTTATAGGAATTG
GGATACTTTCTTTAGAAGCTGATTTCTCTATTAATTTTGGAGATTTTCTAACACTTATATGTTCATTCGGATTTGCATTT
CATATATTCTTTACAAGTGAGTTTGCAAAAGATAACAACCCAATGGCATTGACAGCTATTCAATTTACAGTAGCGTTTTT
AATGTCTGTTGTAGTTCAAACATTTGCAGGTCAATTAAAGATGGAAGCTGAATTATCTGGTTACATGGGAACTATGTATC
TAGCTGTATTTAGTACTACAATTGGATTTTTATTTCAGACTATATGTCAAAAAAGAGTTGATGGAACTAGAACAGCTATA
ATATTATCCACAGAGGCTGTATTTGGTACAATATTTTCTATAATAATTTTAAAGGAGCTTATTACAGCAAAATTGGTTAT
TGGTAGTATCTTGATATTTGTTGCAATCATAACTGCAGAAACTAAATTATCTTTTTTAAAGAGCAAAAAAGTGAAACTTA
AAGATTCAGAGGAGTCTTCATTAGAAAGTATTTAA

Upstream 100 bases:

>100_bases
AAAATTTACTATATTAATTTATAGTAATGCTTATAGAAAAACTCTCTTGCTGTTTAGGGGGTTTATAATTTTGCAAAAAA
ATAAAAAGGAGGGGGCTTTA

Downstream 100 bases:

>100_bases
TATGACAACTATTTCCTAATTAATCAAATAAATTATGTATTATGTAGAAATTTGACATCAAAACTTGGTTGATACTGGTG
TTTCAAAGTGATAAAATTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MKKYFGEIGLIFIAIIWGSGFVATQFALDGGLTPLQIITLRFFLAAIIMNLLFFKQIRANMGKKLLKAGGILGIFLFLAF
TVQTIGLMYTTPSKNAFITAANVVIVPFIGFILYRRKLDKIGIISSLVALIGIGILSLEADFSINFGDFLTLICSFGFAF
HIFFTSEFAKDNNPMALTAIQFTVAFLMSVVVQTFAGQLKMEAELSGYMGTMYLAVFSTTIGFLFQTICQKRVDGTRTAI
ILSTEAVFGTIFSIIILKELITAKLVIGSILIFVAIITAETKLSFLKSKKVKLKDSEESSLESI

Sequences:

>Translated_304_residues
MKKYFGEIGLIFIAIIWGSGFVATQFALDGGLTPLQIITLRFFLAAIIMNLLFFKQIRANMGKKLLKAGGILGIFLFLAF
TVQTIGLMYTTPSKNAFITAANVVIVPFIGFILYRRKLDKIGIISSLVALIGIGILSLEADFSINFGDFLTLICSFGFAF
HIFFTSEFAKDNNPMALTAIQFTVAFLMSVVVQTFAGQLKMEAELSGYMGTMYLAVFSTTIGFLFQTICQKRVDGTRTAI
ILSTEAVFGTIFSIIILKELITAKLVIGSILIFVAIITAETKLSFLKSKKVKLKDSEESSLESI
>Mature_304_residues
MKKYFGEIGLIFIAIIWGSGFVATQFALDGGLTPLQIITLRFFLAAIIMNLLFFKQIRANMGKKLLKAGGILGIFLFLAF
TVQTIGLMYTTPSKNAFITAANVVIVPFIGFILYRRKLDKIGIISSLVALIGIGILSLEADFSINFGDFLTLICSFGFAF
HIFFTSEFAKDNNPMALTAIQFTVAFLMSVVVQTFAGQLKMEAELSGYMGTMYLAVFSTTIGFLFQTICQKRVDGTRTAI
ILSTEAVFGTIFSIIILKELITAKLVIGSILIFVAIITAETKLSFLKSKKVKLKDSEESSLESI

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33380; Mature: 33380

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYFGEIGLIFIAIIWGSGFVATQFALDGGLTPLQIITLRFFLAAIIMNLLFFKQIRAN
CCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGKKLLKAGGILGIFLFLAFTVQTIGLMYTTPSKNAFITAANVVIVPFIGFILYRRKLDK
HHHHHHHHCCHHHHHHHHHHHHHHHHHEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
IGIISSLVALIGIGILSLEADFSINFGDFLTLICSFGFAFHIFFTSEFAKDNNPMALTAI
HHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHEEEHHHCCCCCCEEHHHH
QFTVAFLMSVVVQTFAGQLKMEAELSGYMGTMYLAVFSTTIGFLFQTICQKRVDGTRTAI
HHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
ILSTEAVFGTIFSIIILKELITAKLVIGSILIFVAIITAETKLSFLKSKKVKLKDSEESS
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LESI
HCCC
>Mature Secondary Structure
MKKYFGEIGLIFIAIIWGSGFVATQFALDGGLTPLQIITLRFFLAAIIMNLLFFKQIRAN
CCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGKKLLKAGGILGIFLFLAFTVQTIGLMYTTPSKNAFITAANVVIVPFIGFILYRRKLDK
HHHHHHHHCCHHHHHHHHHHHHHHHHHEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
IGIISSLVALIGIGILSLEADFSINFGDFLTLICSFGFAFHIFFTSEFAKDNNPMALTAI
HHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHEEEHHHCCCCCCEEHHHH
QFTVAFLMSVVVQTFAGQLKMEAELSGYMGTMYLAVFSTTIGFLFQTICQKRVDGTRTAI
HHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
ILSTEAVFGTIFSIIILKELITAKLVIGSILIFVAIITAETKLSFLKSKKVKLKDSEESS
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LESI
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]