Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is 126698960

Identifier: 126698960

GI number: 126698960

Start: 1575670

End: 1575867

Strand: Direct

Name: 126698960

Synonym: CD1360A

Alternate gene names: NA

Gene position: 1575670-1575867 (Clockwise)

Preceding gene: 126698955

Following gene: 126698961

Centisome position: 36.73

GC content: 26.77

Gene sequence:

>198_bases
ATGTTTAAAAATAACTTGAAATATTATAGAAAATGCAAAGGTATGACACAAATTCAACTTGCCAGAAAGGCTGGAATTAC
AAATGATTATATATCTCAAATAGAAAGAGGCATAAAAAATCCTGGACTTCTTATGGCTAAGAAGATTTCTAGTATTTTAG
AACAAAATATAGAAGAAGTTTTTTTTATACAGTCATAG

Upstream 100 bases:

>100_bases
AATATTTTTTTCTAAAATATATTGATAAAGAACAAATAATTCTATATAATCTAAGTGAGGAAGAACAAAATATTCTTAAT
AGTAATGGAGGTATAAAACA

Downstream 100 bases:

>100_bases
AACAATATGTTCTTGAAAGTTGTGAGATTAGTAAAAAACTGTGCACTAAAGAGATTATTGTAAATTTGAAGCTAATAATA
AGTATATAAAAAAGGAGAAG

Product: phage regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MFKNNLKYYRKCKGMTQIQLARKAGITNDYISQIERGIKNPGLLMAKKISSILEQNIEEVFFIQS

Sequences:

>Translated_65_residues
MFKNNLKYYRKCKGMTQIQLARKAGITNDYISQIERGIKNPGLLMAKKISSILEQNIEEVFFIQS
>Mature_65_residues
MFKNNLKYYRKCKGMTQIQLARKAGITNDYISQIERGIKNPGLLMAKKISSILEQNIEEVFFIQS

Specific function: Unknown

COG id: COG1476

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7555; Mature: 7555

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKNNLKYYRKCKGMTQIQLARKAGITNDYISQIERGIKNPGLLMAKKISSILEQNIEEV
CCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FFIQS
HHCCC
>Mature Secondary Structure
MFKNNLKYYRKCKGMTQIQLARKAGITNDYISQIERGIKNPGLLMAKKISSILEQNIEEV
CCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FFIQS
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA