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The map label for this gene is rbgA [H]

Identifier: 126698855

GI number: 126698855

Start: 1460273

End: 1461142

Strand: Direct

Name: rbgA [H]

Synonym: CD1258

Alternate gene names: 126698855

Gene position: 1460273-1461142 (Clockwise)

Preceding gene: 126698854

Following gene: 126698856

Centisome position: 34.04

GC content: 31.49

Gene sequence:

>870_bases
ATGAATGACAATCTACATATAAACTGGTATCCAGGTCATATGAAAAAAACTAAGGAGTTAGTAAAAAATAACTTAAAATT
GATTGATGTAGTAATTGAACTTTTGGATGCTAGAATCCCGTTTAGTAGTAAAAATCCAGACATAGACAGGCTTGTAGGAG
ATAAGCCAAGAGTTGTCGTACTTAATAAGAGTGATATGGCAGATAGGGATAAATTGAATCAATGGATTGAATACTATAAG
AAAATTAATATCAAAGCTATACCAGTAGATACAATAAAAGGCGTTGGTATAAATAAGATAATCGAAGAATGTAAAAATGT
AACTAGAGAAAAAATGAGTTCTTTAAAAGACAAAGGGAGAAAAGAAAGAGCTATACGAATAATGATAGTTGGAGTTCCAA
ACGTTGGTAAATCGTCTCTTATAAACAAATTAACAGGTAGAAAAAGCACTCAAACTGGAGATAAGCCAGGAGTAACGAAA
GGGAAACAATGGGTTAGATTAAAGGGAAATCTTGAACTTTTAGATACACCTGGAATACTTTGGCCTAAGTTTGAAGACCA
AGAAGTTGCATTAAATTTAGCATTTAGTAGAGCTATAAAGGATGAGATTTTAGATACTGAAACTTTGGCTTTAAGACTTA
TAGAAAAACTTATGAAAATAGAACCTGAGAAGTTGAAAGCCAGATATAAGTTAGATTGTCTAGGAGAAACTCCAATTGAA
ACTATGGATATGATTGGCCATAAAAGAGGGTTTATAACAGGTAAAAAAGAACTAGATTATACACGCATAGCCACAACTGT
ATTAAATGAATTTAGAGATGGAAAAATAGGAAATATAACATTGGAAGTTCCAGAAAACGTTAAAAGATAG

Upstream 100 bases:

>100_bases
TATAGTTTGTTAAGATAGATTTTTTAAGTGGAATTAGGATATAATAATATAATATTAATAAGGAGTGATACATGTGTCAA
ATGAATACGAAGAGTATCTT

Downstream 100 bases:

>100_bases
ATTTTAAAACAAAATCAAAAATTTAATGTTAAAAATTTAAAAAAGCCTTTTAGCAAAGGCTTTTTTATTTTTTTGAAATA
TAGACAAATATCTCCATATA

Product: GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MNDNLHINWYPGHMKKTKELVKNNLKLIDVVIELLDARIPFSSKNPDIDRLVGDKPRVVVLNKSDMADRDKLNQWIEYYK
KINIKAIPVDTIKGVGINKIIEECKNVTREKMSSLKDKGRKERAIRIMIVGVPNVGKSSLINKLTGRKSTQTGDKPGVTK
GKQWVRLKGNLELLDTPGILWPKFEDQEVALNLAFSRAIKDEILDTETLALRLIEKLMKIEPEKLKARYKLDCLGETPIE
TMDMIGHKRGFITGKKELDYTRIATTVLNEFRDGKIGNITLEVPENVKR

Sequences:

>Translated_289_residues
MNDNLHINWYPGHMKKTKELVKNNLKLIDVVIELLDARIPFSSKNPDIDRLVGDKPRVVVLNKSDMADRDKLNQWIEYYK
KINIKAIPVDTIKGVGINKIIEECKNVTREKMSSLKDKGRKERAIRIMIVGVPNVGKSSLINKLTGRKSTQTGDKPGVTK
GKQWVRLKGNLELLDTPGILWPKFEDQEVALNLAFSRAIKDEILDTETLALRLIEKLMKIEPEKLKARYKLDCLGETPIE
TMDMIGHKRGFITGKKELDYTRIATTVLNEFRDGKIGNITLEVPENVKR
>Mature_289_residues
MNDNLHINWYPGHMKKTKELVKNNLKLIDVVIELLDARIPFSSKNPDIDRLVGDKPRVVVLNKSDMADRDKLNQWIEYYK
KINIKAIPVDTIKGVGINKIIEECKNVTREKMSSLKDKGRKERAIRIMIVGVPNVGKSSLINKLTGRKSTQTGDKPGVTK
GKQWVRLKGNLELLDTPGILWPKFEDQEVALNLAFSRAIKDEILDTETLALRLIEKLMKIEPEKLKARYKLDCLGETPIE
TMDMIGHKRGFITGKKELDYTRIATTVLNEFRDGKIGNITLEVPENVKR

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=296, Percent_Identity=32.4324324324324, Blast_Score=135, Evalue=3e-32,
Organism=Homo sapiens, GI296317324, Length=272, Percent_Identity=27.5735294117647, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI9506611, Length=272, Percent_Identity=27.5735294117647, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI45643129, Length=178, Percent_Identity=32.0224719101124, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI45643127, Length=178, Percent_Identity=32.0224719101124, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI45593130, Length=178, Percent_Identity=32.0224719101124, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7019419, Length=256, Percent_Identity=25, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193211047, Length=218, Percent_Identity=32.1100917431193, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17534827, Length=298, Percent_Identity=28.8590604026846, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI25143545, Length=275, Percent_Identity=26.1818181818182, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI115535155, Length=275, Percent_Identity=26.1818181818182, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71982363, Length=178, Percent_Identity=30.3370786516854, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI32563985, Length=245, Percent_Identity=25.7142857142857, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71990926, Length=245, Percent_Identity=25.7142857142857, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI32563983, Length=245, Percent_Identity=25.7142857142857, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6320842, Length=288, Percent_Identity=27.0833333333333, Blast_Score=93, Evalue=6e-20,
Organism=Saccharomyces cerevisiae, GI6324381, Length=254, Percent_Identity=25.5905511811024, Blast_Score=74, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6323744, Length=224, Percent_Identity=26.7857142857143, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85815858, Length=304, Percent_Identity=26.3157894736842, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI28572990, Length=293, Percent_Identity=30.3754266211604, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI19922460, Length=259, Percent_Identity=27.027027027027, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 32997; Mature: 32997

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDNLHINWYPGHMKKTKELVKNNLKLIDVVIELLDARIPFSSKNPDIDRLVGDKPRVVV
CCCCEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCEEE
LNKSDMADRDKLNQWIEYYKKINIKAIPVDTIKGVGINKIIEECKNVTREKMSSLKDKGR
ECCCCCCCHHHHHHHHHHHHHCCCEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
KERAIRIMIVGVPNVGKSSLINKLTGRKSTQTGDKPGVTKGKQWVRLKGNLELLDTPGIL
CCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCCCC
WPKFEDQEVALNLAFSRAIKDEILDTETLALRLIEKLMKIEPEKLKARYKLDCLGETPIE
CCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHEEEEEECCCCCHH
TMDMIGHKRGFITGKKELDYTRIATTVLNEFRDGKIGNITLEVPENVKR
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MNDNLHINWYPGHMKKTKELVKNNLKLIDVVIELLDARIPFSSKNPDIDRLVGDKPRVVV
CCCCEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCEEE
LNKSDMADRDKLNQWIEYYKKINIKAIPVDTIKGVGINKIIEECKNVTREKMSSLKDKGR
ECCCCCCCHHHHHHHHHHHHHCCCEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
KERAIRIMIVGVPNVGKSSLINKLTGRKSTQTGDKPGVTKGKQWVRLKGNLELLDTPGIL
CCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCCCC
WPKFEDQEVALNLAFSRAIKDEILDTETLALRLIEKLMKIEPEKLKARYKLDCLGETPIE
CCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHEEEEEECCCCCHH
TMDMIGHKRGFITGKKELDYTRIATTVLNEFRDGKIGNITLEVPENVKR
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]