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The map label for this gene is ycbG [H]

Identifier: 126698764

GI number: 126698764

Start: 1367910

End: 1368623

Strand: Direct

Name: ycbG [H]

Synonym: CD1169

Alternate gene names: 126698764

Gene position: 1367910-1368623 (Clockwise)

Preceding gene: 126698761

Following gene: 126698765

Centisome position: 31.88

GC content: 27.03

Gene sequence:

>714_bases
ATGTTTAATAGTATAGCTAGTAAAAAAGTTTATGAACAAGTAATTGAGCAAATACAATATAAAATACTAAATGGAGAGTT
AAAAAAGGGGGATAAATTACTATCAGAAAGAGAACTGTCTGAACAAATGAATGTGAGTAGAACTTCCATAAGGGAAGCTA
TTAGGGTATTAGAGACTATGGGAGTGATAGAAAGCAGACAGGGTGAAGGAAATTTTATATGTACAAATATAGAAAAAACT
TTAATAGAACCTTTATCTATGATTTTTAAACTTAATAATGGTACACTTGAAGATATATTAGAGCTTAGAATAATCCTAGA
AATTGAGATTGCAAAACTTGCTTCAAAGAGAATAACTTCTTCTGAAGTTATAGAATTGAAACATATAATAGATGAAATGA
GGGTAGAAACTAATAAAAAAGATAATAATCGAGTACTGGTGTTATTAGACCAAAAATTTCACAGTAAACTAGCAACATTA
AGTAAAAATTATTTAATTCAAAGTCTTTTTATGACAGCATCAAAATTATTTGATGGATTTATAGAAGATGCAAGAGAAAA
AATAATCGCAGAACCTTTTAATGAAAATATATTGCTTAAACAGCATGAAGCTATATACAATGCAGTTGTAGAAAATGATG
TAGAACTTGCATGTGAGAAAGCAAAGGAACATATGGATTTTATAAGTAAAAATTATAGAAAAAATGAAAATTAA

Upstream 100 bases:

>100_bases
TAAGATATTATATTAAAAGTAATAAAAATATATGAATGTAATGGCTTAAGATATATAATAGATATATATTACAACAACGA
TTATCATATTGGAGGAAAAA

Downstream 100 bases:

>100_bases
AAGTTTGTTATAAAATAAATTATTCTTGCAAATGGTAGATAATGGTACTATCATATAAATGTAAAACTGGTATGACCACA
TACCAATTTTATAGTTTATT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MFNSIASKKVYEQVIEQIQYKILNGELKKGDKLLSERELSEQMNVSRTSIREAIRVLETMGVIESRQGEGNFICTNIEKT
LIEPLSMIFKLNNGTLEDILELRIILEIEIAKLASKRITSSEVIELKHIIDEMRVETNKKDNNRVLVLLDQKFHSKLATL
SKNYLIQSLFMTASKLFDGFIEDAREKIIAEPFNENILLKQHEAIYNAVVENDVELACEKAKEHMDFISKNYRKNEN

Sequences:

>Translated_237_residues
MFNSIASKKVYEQVIEQIQYKILNGELKKGDKLLSERELSEQMNVSRTSIREAIRVLETMGVIESRQGEGNFICTNIEKT
LIEPLSMIFKLNNGTLEDILELRIILEIEIAKLASKRITSSEVIELKHIIDEMRVETNKKDNNRVLVLLDQKFHSKLATL
SKNYLIQSLFMTASKLFDGFIEDAREKIIAEPFNENILLKQHEAIYNAVVENDVELACEKAKEHMDFISKNYRKNEN
>Mature_237_residues
MFNSIASKKVYEQVIEQIQYKILNGELKKGDKLLSERELSEQMNVSRTSIREAIRVLETMGVIESRQGEGNFICTNIEKT
LIEPLSMIFKLNNGTLEDILELRIILEIEIAKLASKRITSSEVIELKHIIDEMRVETNKKDNNRVLVLLDQKFHSKLATL
SKNYLIQSLFMTASKLFDGFIEDAREKIIAEPFNENILLKQHEAIYNAVVENDVELACEKAKEHMDFISKNYRKNEN

Specific function: Activator For The Glycolate Oxidation Locus. [C]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789353, Length=231, Percent_Identity=28.5714285714286, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1790032, Length=237, Percent_Identity=26.1603375527426, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1789621, Length=234, Percent_Identity=27.7777777777778, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786303, Length=133, Percent_Identity=35.3383458646617, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082208, Length=222, Percent_Identity=25.2252252252252, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790780, Length=172, Percent_Identity=25, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48994961, Length=218, Percent_Identity=25.2293577981651, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27423; Mature: 27423

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNSIASKKVYEQVIEQIQYKILNGELKKGDKLLSERELSEQMNVSRTSIREAIRVLETM
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
GVIESRQGEGNFICTNIEKTLIEPLSMIFKLNNGTLEDILELRIILEIEIAKLASKRITS
HHHHCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH
SEVIELKHIIDEMRVETNKKDNNRVLVLLDQKFHSKLATLSKNYLIQSLFMTASKLFDGF
HHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEDAREKIIAEPFNENILLKQHEAIYNAVVENDVELACEKAKEHMDFISKNYRKNEN
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFNSIASKKVYEQVIEQIQYKILNGELKKGDKLLSERELSEQMNVSRTSIREAIRVLETM
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
GVIESRQGEGNFICTNIEKTLIEPLSMIFKLNNGTLEDILELRIILEIEIAKLASKRITS
HHHHCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH
SEVIELKHIIDEMRVETNKKDNNRVLVLLDQKFHSKLATLSKNYLIQSLFMTASKLFDGF
HHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEDAREKIIAEPFNENILLKQHEAIYNAVVENDVELACEKAKEHMDFISKNYRKNEN
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704254; 9384377 [H]