| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698751
Identifier: 126698751
GI number: 126698751
Start: 1354325
End: 1355407
Strand: Direct
Name: 126698751
Synonym: CD1156
Alternate gene names: NA
Gene position: 1354325-1355407 (Clockwise)
Preceding gene: 126698750
Following gene: 126698753
Centisome position: 31.57
GC content: 36.2
Gene sequence:
>1083_bases ATGAAAAAAATCAGGAAATTAGCTACTAAACTATTGATTGCAACGATGGTTTTAACCTCATGTATGAGTGTAACAGTTTA TGGTATGACAGCTAAAGATGTTACTGCAAAGACACCGAAAAGTTATGTAGCTGGAACCAACAGTATATATGGTCCAAAGT TATCACAAGCTCAACTTAATTCGGTAGCACAAGCAACAGCAGACTTTATGAACAAGAAAATTACAAAGAACATGACCACA GATGCTAAGATTAGGGTTGCTTATAATCACATTAAAAACAACACAACATATGTTAACTGGAACGCAGCAGAGGGAGCCAA TACTGCTTATACATTGGTTACTAAAAAAGGTGCTTGTTCTGGAATGTGTAGGAGCTTGAAAGCTTTATGTGATGCTATGG GAATTGAATGTTATTATGTACATAGTACAACAAATGACCATCAGTGGAATCTTATTCGTTTTGAGGATGGACGTTTGTAT CATGTAGATATTGATGCCAACAAATCAGCAGGAGCAGACATCATATACAAGAGTCTTACTCACCCATTACCATTTGACAA GAAAGCATATCCAGCTGTTGGCGAAGTAGTAAAGACACAGAATCCAACGCCAACTGTTAAGAAACCTACGCCAGCTAAGC CTTCTGCGCCAGTTGGACCTGGGAATCACACTATGATAGCAGATCAACAAGGGGCAATACTTGATGAAGTTTATGGAAAT AATCTACGTCCAAAAATTGAAATGTATGAGGGAGTTCCGTGTAGTTTAATCAACTCATCAATAAATACAATTAAGTTTAC AAGCAAAAATTCAAATTTAGACCCATCAAAGCATACAGTTACTGTAATAGGGTTTATGAATACACCATATGGTATGGTTG CATTAGCTCCAGATGGTGTACCTGATGAGTATCCTTTTGAATATGATAAGCCATTTTCTTTAGATTTTACTGGTAAGAAC CTTTCTGCAGCAGAATTATCAAAAAAGTGTAAAGAAAATAATGTAATTATTAAAGTGGAAATTGGTGAAACGGCATCTAA TTCTGGAAGAGGGATGGTAGCATACGCTAGATATGTGAATTAA
Upstream 100 bases:
>100_bases GCTATGCATACATGTTGATAATCCATATTTTAAATCTAAAATGAACTTAATTAATGGTAGGGAATTGAAAGTAAAATATA TTATAAAGGAGAATGCTAAT
Downstream 100 bases:
>100_bases TACAAATATACTAGTGTACAAATAGAACATATTATAAATAATGCACCCTCGCACAAAGGGTGCATTTATCATTATATCAG TCATTTTAGAAAATAAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 360; Mature: 360
Protein sequence:
>360_residues MKKIRKLATKLLIATMVLTSCMSVTVYGMTAKDVTAKTPKSYVAGTNSIYGPKLSQAQLNSVAQATADFMNKKITKNMTT DAKIRVAYNHIKNNTTYVNWNAAEGANTAYTLVTKKGACSGMCRSLKALCDAMGIECYYVHSTTNDHQWNLIRFEDGRLY HVDIDANKSAGADIIYKSLTHPLPFDKKAYPAVGEVVKTQNPTPTVKKPTPAKPSAPVGPGNHTMIADQQGAILDEVYGN NLRPKIEMYEGVPCSLINSSINTIKFTSKNSNLDPSKHTVTVIGFMNTPYGMVALAPDGVPDEYPFEYDKPFSLDFTGKN LSAAELSKKCKENNVIIKVEIGETASNSGRGMVAYARYVN
Sequences:
>Translated_360_residues MKKIRKLATKLLIATMVLTSCMSVTVYGMTAKDVTAKTPKSYVAGTNSIYGPKLSQAQLNSVAQATADFMNKKITKNMTT DAKIRVAYNHIKNNTTYVNWNAAEGANTAYTLVTKKGACSGMCRSLKALCDAMGIECYYVHSTTNDHQWNLIRFEDGRLY HVDIDANKSAGADIIYKSLTHPLPFDKKAYPAVGEVVKTQNPTPTVKKPTPAKPSAPVGPGNHTMIADQQGAILDEVYGN NLRPKIEMYEGVPCSLINSSINTIKFTSKNSNLDPSKHTVTVIGFMNTPYGMVALAPDGVPDEYPFEYDKPFSLDFTGKN LSAAELSKKCKENNVIIKVEIGETASNSGRGMVAYARYVN >Mature_360_residues MKKIRKLATKLLIATMVLTSCMSVTVYGMTAKDVTAKTPKSYVAGTNSIYGPKLSQAQLNSVAQATADFMNKKITKNMTT DAKIRVAYNHIKNNTTYVNWNAAEGANTAYTLVTKKGACSGMCRSLKALCDAMGIECYYVHSTTNDHQWNLIRFEDGRLY HVDIDANKSAGADIIYKSLTHPLPFDKKAYPAVGEVVKTQNPTPTVKKPTPAKPSAPVGPGNHTMIADQQGAILDEVYGN NLRPKIEMYEGVPCSLINSSINTIKFTSKNSNLDPSKHTVTVIGFMNTPYGMVALAPDGVPDEYPFEYDKPFSLDFTGKN LSAAELSKKCKENNVIIKVEIGETASNSGRGMVAYARYVN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39295; Mature: 39295
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIRKLATKLLIATMVLTSCMSVTVYGMTAKDVTAKTPKSYVAGTNSIYGPKLSQAQLN CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHH SVAQATADFMNKKITKNMTTDAKIRVAYNHIKNNTTYVNWNAAEGANTAYTLVTKKGACS HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCHH GMCRSLKALCDAMGIECYYVHSTTNDHQWNLIRFEDGRLYHVDIDANKSAGADIIYKSLT HHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHC HPLPFDKKAYPAVGEVVKTQNPTPTVKKPTPAKPSAPVGPGNHTMIADQQGAILDEVYGN CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHCC NLRPKIEMYEGVPCSLINSSINTIKFTSKNSNLDPSKHTVTVIGFMNTPYGMVALAPDGV CCCCEEEEECCCCHHHHCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCC PDEYPFEYDKPFSLDFTGKNLSAAELSKKCKENNVIIKVEIGETASNSGRGMVAYARYVN CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCEEEEEEEECC >Mature Secondary Structure MKKIRKLATKLLIATMVLTSCMSVTVYGMTAKDVTAKTPKSYVAGTNSIYGPKLSQAQLN CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHH SVAQATADFMNKKITKNMTTDAKIRVAYNHIKNNTTYVNWNAAEGANTAYTLVTKKGACS HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCHH GMCRSLKALCDAMGIECYYVHSTTNDHQWNLIRFEDGRLYHVDIDANKSAGADIIYKSLT HHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHC HPLPFDKKAYPAVGEVVKTQNPTPTVKKPTPAKPSAPVGPGNHTMIADQQGAILDEVYGN CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHCC NLRPKIEMYEGVPCSLINSSINTIKFTSKNSNLDPSKHTVTVIGFMNTPYGMVALAPDGV CCCCEEEEECCCCHHHHCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCC PDEYPFEYDKPFSLDFTGKNLSAAELSKKCKENNVIIKVEIGETASNSGRGMVAYARYVN CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA