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The map label for this gene is ydcN [H]

Identifier: 126698714

GI number: 126698714

Start: 1319390

End: 1319941

Strand: Direct

Name: ydcN [H]

Synonym: CD1122

Alternate gene names: 126698714

Gene position: 1319390-1319941 (Clockwise)

Preceding gene: 126698713

Following gene: 126698715

Centisome position: 30.75

GC content: 30.62

Gene sequence:

>552_bases
ATGGATAATAAATTTCCTAATGTGGGAGAAAATTTAAGGTTATTGAGACAAGAAATGGGCATAAGTTTAGACAAAGCTTC
AAAGATGACAGGTGTCAGTAAAGCAATGCTTGGACAGATTGAGAGAGGTGAATCAAGTCCGACAGTATCTACTTTATGGA
AAATTTCATCTGGATTTAAAATAAATTTTACTACACTATTAAATGAAAATACAAATACCTATGAGGTTATAAAGAAAGAA
GAAGTAGAGCCTATTGTTGAGCAAAAAGGGAACATGAAGTTATATCCAATATACCCTTTTAGCCCTCAAAGAAGGTTTGA
ACTTTTTATAATTGAGCTTGAGGAAAACTGTACTCATGTTTCATCTACACATAGTCATGTTTTAGAAGAATATGTGCTCG
TAATAGAAGGTAAACTTGACCTTAATGTGGATGGGAAAACTTATATTTTAGAGTCTGGACATTCTATTAGGTTTGATGGA
ACTTTAGAGCATATATATAAAAATTTAAATAAAGGAAAAACTATATTTCACAATATAGAGGTTTATAGATAA

Upstream 100 bases:

>100_bases
GATGAAATTTGTAACAATCATATGTTAAAATTAAAAGAGATAGTAGAACTTACAGGAGTAAAAATCATAGAATACAAATA
GCTATCAGGAGGATTTTAAC

Downstream 100 bases:

>100_bases
TTTTATAGTTATCCTTTTCTAAAATAAATGAAAATTTTAGAAAAGGATAACTTATTTTTATAATGTCGAAAAGATTTATA
TGTATGTGATGATGTTATTG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MDNKFPNVGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKISSGFKINFTTLLNENTNTYEVIKKE
EVEPIVEQKGNMKLYPIYPFSPQRRFELFIIELEENCTHVSSTHSHVLEEYVLVIEGKLDLNVDGKTYILESGHSIRFDG
TLEHIYKNLNKGKTIFHNIEVYR

Sequences:

>Translated_183_residues
MDNKFPNVGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKISSGFKINFTTLLNENTNTYEVIKKE
EVEPIVEQKGNMKLYPIYPFSPQRRFELFIIELEENCTHVSSTHSHVLEEYVLVIEGKLDLNVDGKTYILESGHSIRFDG
TLEHIYKNLNKGKTIFHNIEVYR
>Mature_183_residues
MDNKFPNVGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKISSGFKINFTTLLNENTNTYEVIKKE
EVEPIVEQKGNMKLYPIYPFSPQRRFELFIIELEENCTHVSSTHSHVLEEYVLVIEGKLDLNVDGKTYILESGHSIRFDG
TLEHIYKNLNKGKTIFHNIEVYR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=181, Percent_Identity=38.6740331491713, Blast_Score=131, Evalue=3e-32,
Organism=Escherichia coli, GI1787557, Length=167, Percent_Identity=26.3473053892216, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 21041; Mature: 21041

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNKFPNVGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKISSGFK
CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHEECCCCCE
INFTTLLNENTNTYEVIKKEEVEPIVEQKGNMKLYPIYPFSPQRRFELFIIELEENCTHV
EEEEEEECCCCCCEEEHHHHCCCHHHHCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCC
SSTHSHVLEEYVLVIEGKLDLNVDGKTYILESGHSIRFDGTLEHIYKNLNKGKTIFHNIE
HHHHHHHHHHEEEEEECCEEEEECCCEEEEECCCEEEECCHHHHHHHHHCCCCEEEEEEE
VYR
EEC
>Mature Secondary Structure
MDNKFPNVGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKISSGFK
CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHEECCCCCE
INFTTLLNENTNTYEVIKKEEVEPIVEQKGNMKLYPIYPFSPQRRFELFIIELEENCTHV
EEEEEEECCCCCCEEEHHHHCCCHHHHCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCC
SSTHSHVLEEYVLVIEGKLDLNVDGKTYILESGHSIRFDGTLEHIYKNLNKGKTIFHNIE
HHHHHHHHHHEEEEEECCEEEEECCCEEEEECCCEEEECCHHHHHHHHHCCCCEEEEEEE
VYR
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]