| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is manZ [H]
Identifier: 126698665
GI number: 126698665
Start: 1270360
End: 1271202
Strand: Direct
Name: manZ [H]
Synonym: CD1078
Alternate gene names: 126698665
Gene position: 1270360-1271202 (Clockwise)
Preceding gene: 126698664
Following gene: 126698667
Centisome position: 29.61
GC content: 32.27
Gene sequence:
>843_bases ATGACAACGAGTTCTAAGAAATTAGAGACAATTTCACCAGATAGTAAAATAACGAGGAAAGACTTTTGGAAATGTTTTAG AAGGTCATTGACATTAGATTCATCTTGGAACTACGAACGTATGCAAAATATAGCATATGCATACATGATGGCACCAATAA TCCGTAGATTATATAAAGATGATAAAGAAAAGAAATCTAAGGCTTTAAAAAGACATTTAGAATTTATGTCAGTTACTCCT CATATAAGTACTCTTTTGGTAGGTATATCTGGAGCTATGGAAGAAGAAAATGCAAAGAATAAAGAATTTGATGCTAATAG TATAAATGCTGTTAAATCAAGTTTAATGGGTCCAGTTTCTGGGATAGGAGATTCATTTTTCTGGGGAACATTAAAGCTTA TAGCAGCTGGGGTTGGTATAGCTTTAGCTTCTCAGGGTAACATAATGGGACCGATTTTATTCCTTTTAATAATAAATGTT CCTCATTTTATTATACGCTATATATGTCTAGATAAAGGATTTAAGTATGGAACTCAATTCTTTAAAGATGTGAGTGGTTC AAGTATAGTTTCAAAAGTTATGGAAGCAGCTTCAATGTTAGGGCTTATGGTAATTGGAGGTATGACTGCATCTAATGTAA TGTTAAAACTTAGTGTTAATGTAGGTAGTGGAGAATGGGCAGAGCCTATTCAAACTTACTTAGACCAAATAATGCCATGT ATGCTTCCAGCTATGATATTCGGTATTATGTATTGGTTATTAGGAAAAAAGGTAAAGACAACTACGATATTAATTTCAGT TATGATTATTTGTATAGTATTGGCTGCTATTGGAGTAGTATAA
Upstream 100 bases:
>100_bases GTTGCTTACCTAAACATAACAGTAACAGGAGTTGCATTGTTTGGATTAGCAATAGCTTTAATATATGTTAACTTTGTAGG AGAGAAGGAGGTAATAGTAG
Downstream 100 bases:
>100_bases ATAAAAAAATCCCAAGTTCATTTGAACGAGGGATTTTTTGACTAAATTAAATAAAAAAGAAAGATGGTTCATAATAATTT ATAAGCATTTATGTGATAGT
Product: PTS system transporter subunit IID
Products: protein histidine; sugar phosphate; D-glucosamine-6-phosphate [Cytoplasm]; pyruvate; glucose-6-phosphate [Cytoplasm]; N-acetyl-D-glucosamine-6-phosphate [Cytoplasm]; mannose-6-phosphate [Cytoplasm]; fructose-6-phosphate [Cytoplasm] [C]
Alternate protein names: EII-M-Man; EIID-Man; PTS system mannose-specific EIID component [H]
Number of amino acids: Translated: 280; Mature: 279
Protein sequence:
>280_residues MTTSSKKLETISPDSKITRKDFWKCFRRSLTLDSSWNYERMQNIAYAYMMAPIIRRLYKDDKEKKSKALKRHLEFMSVTP HISTLLVGISGAMEEENAKNKEFDANSINAVKSSLMGPVSGIGDSFFWGTLKLIAAGVGIALASQGNIMGPILFLLIINV PHFIIRYICLDKGFKYGTQFFKDVSGSSIVSKVMEAASMLGLMVIGGMTASNVMLKLSVNVGSGEWAEPIQTYLDQIMPC MLPAMIFGIMYWLLGKKVKTTTILISVMIICIVLAAIGVV
Sequences:
>Translated_280_residues MTTSSKKLETISPDSKITRKDFWKCFRRSLTLDSSWNYERMQNIAYAYMMAPIIRRLYKDDKEKKSKALKRHLEFMSVTP HISTLLVGISGAMEEENAKNKEFDANSINAVKSSLMGPVSGIGDSFFWGTLKLIAAGVGIALASQGNIMGPILFLLIINV PHFIIRYICLDKGFKYGTQFFKDVSGSSIVSKVMEAASMLGLMVIGGMTASNVMLKLSVNVGSGEWAEPIQTYLDQIMPC MLPAMIFGIMYWLLGKKVKTTTILISVMIICIVLAAIGVV >Mature_279_residues TTSSKKLETISPDSKITRKDFWKCFRRSLTLDSSWNYERMQNIAYAYMMAPIIRRLYKDDKEKKSKALKRHLEFMSVTPH ISTLLVGISGAMEEENAKNKEFDANSINAVKSSLMGPVSGIGDSFFWGTLKLIAAGVGIALASQGNIMGPILFLLIINVP HFIIRYICLDKGFKYGTQFFKDVSGSSIVSKVMEAASMLGLMVIGGMTASNVMLKLSVNVGSGEWAEPIQTYLDQIMPCM LPAMIFGIMYWLLGKKVKTTTILISVMIICIVLAAIGVV
Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i
COG id: COG3716
COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID
Gene ontology:
Cell location: Cell inner membrane; Single-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIID domain [H]
Homologues:
Organism=Escherichia coli, GI1788122, Length=275, Percent_Identity=35.6363636363636, Blast_Score=197, Evalue=5e-52, Organism=Escherichia coli, GI1789529, Length=269, Percent_Identity=34.9442379182156, Blast_Score=153, Evalue=1e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004704 - InterPro: IPR018405 [H]
Pfam domain/function: PF03613 EIID-AGA [H]
EC number: NA
Molecular weight: Translated: 30980; Mature: 30849
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: PS51108 PTS_EIID
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 6.4 %Met (Translated Protein) 7.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 6.1 %Met (Mature Protein) 7.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSSKKLETISPDSKITRKDFWKCFRRSLTLDSSWNYERMQNIAYAYMMAPIIRRLYKD CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC DKEKKSKALKRHLEFMSVTPHISTLLVGISGAMEEENAKNKEFDANSINAVKSSLMGPVS CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHH GIGDSFFWGTLKLIAAGVGIALASQGNIMGPILFLLIINVPHFIIRYICLDKGFKYGTQF HCCCHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH FKDVSGSSIVSKVMEAASMLGLMVIGGMTASNVMLKLSVNVGSGEWAEPIQTYLDQIMPC HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH MLPAMIFGIMYWLLGKKVKTTTILISVMIICIVLAAIGVV HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TTSSKKLETISPDSKITRKDFWKCFRRSLTLDSSWNYERMQNIAYAYMMAPIIRRLYKD CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC DKEKKSKALKRHLEFMSVTPHISTLLVGISGAMEEENAKNKEFDANSINAVKSSLMGPVS CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHH GIGDSFFWGTLKLIAAGVGIALASQGNIMGPILFLLIINVPHFIIRYICLDKGFKYGTQF HCCCHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH FKDVSGSSIVSKVMEAASMLGLMVIGGMTASNVMLKLSVNVGSGEWAEPIQTYLDQIMPC HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH MLPAMIFGIMYWLLGKKVKTTTILISVMIICIVLAAIGVV HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: protein N p -phosphohistidine; sugar; phosphoenolpyruvate; glucosamine [Periplasm]; phosphoenolpyruvate; beta-D-glucose [Periplasm]; N-acetyl-D-glucosamine [Periplasm]; mannose [Periplasm]; fructose [Periplasm] [C]
Specific reaction: protein N p -phosphohistidine + sugar = protein histidine + sugar phosphate phosphoenolpyruvate + glucosamine [Periplasm] = D-glucosamine-6-phosphate [Cytoplasm] + pyruvate phosphoenolpyruvate + beta-D-glucose [Periplasm] = glucose-6-phosphate [Cytoplasm]
General reaction: Transferring phosphorus-containing groups; Phosphotransferases with an alcohol group as acceptor [C]
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]