| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is 126698516
Identifier: 126698516
GI number: 126698516
Start: 1108799
End: 1109524
Strand: Direct
Name: 126698516
Synonym: CD0937
Alternate gene names: NA
Gene position: 1108799-1109524 (Clockwise)
Preceding gene: 126698515
Following gene: 126698517
Centisome position: 25.84
GC content: 27.0
Gene sequence:
>726_bases ATGAATGAGATTATGACAAATGAAAATTTAAGAGTTGTAGCAGATGATTTAGTTACAGTTTATGAAACTGATACAGGAGA GAAAATAGTTTTTGCAAGAGAACTACATAATAACTTAGAAGTTAAGAGACAGTTTATAGACTGGATTGAAGATAGAATTA AACAATATGGATTTAAGGAAAATGAGGATTATTCAGTTTTTCACAAAAATATGAAAAACTCAACTGGTGGGAGACCTTCA AAAGAATATGTATTGAAGCTTGATGTAGCAAAAGAACTTGCTATGGTACAAAACAATAATAAAGGAAGAGAAATAAGAAG ATATTTTATAAGATTAGAAAAGTTGCTCAATAGAACCTTATCAAATTCACAGCTTAGTCAAATTAATACTATTGTGAATG AATCATTACTTAAGATGGAAGTTAAACATAATATCCAAATGGAGCAACTTAAAAAAGAGTGTTCAGAATATTATAGACCA ACCTCTAAAACTAAATATGATATATCTTCTTATATAAAAGAAAGACTAGGTATATCAAAAGTTAATGAAGAATTTGAATT AGTTAAGAAAAGAACTCTATTGGTATTAGGTGCTGACAAATGGGAGGATATCCCGAAAGATGTATTACTTAATTCATTAA ACTTAATAGATGAATCAATTAGAATTATAAAATCTGAAAGAAAGACAAATCAGATTAGTTTCTTTGAAAAAGATAATTTC TGTTAA
Upstream 100 bases:
>100_bases ATGATACACAGATTGTTGAGGTTGTAGCTAGTAAATATTATAGTGACAAACCAAGAGTTGAAGTTATGATAGAGGATATT ATCTAAGGAGGACTATAAAT
Downstream 100 bases:
>100_bases TAAAAAGAAAAAAGGAGTGCTTTCACACTCCACTTGTCAAAAATATAAAGCTTTTATCCAAGATTATTATAACATAAACA GGAGTGTGGAAGTATGGATA
Product: phage anti-repressor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 241; Mature: 241
Protein sequence:
>241_residues MNEIMTNENLRVVADDLVTVYETDTGEKIVFARELHNNLEVKRQFIDWIEDRIKQYGFKENEDYSVFHKNMKNSTGGRPS KEYVLKLDVAKELAMVQNNNKGREIRRYFIRLEKLLNRTLSNSQLSQINTIVNESLLKMEVKHNIQMEQLKKECSEYYRP TSKTKYDISSYIKERLGISKVNEEFELVKKRTLLVLGADKWEDIPKDVLLNSLNLIDESIRIIKSERKTNQISFFEKDNF C
Sequences:
>Translated_241_residues MNEIMTNENLRVVADDLVTVYETDTGEKIVFARELHNNLEVKRQFIDWIEDRIKQYGFKENEDYSVFHKNMKNSTGGRPS KEYVLKLDVAKELAMVQNNNKGREIRRYFIRLEKLLNRTLSNSQLSQINTIVNESLLKMEVKHNIQMEQLKKECSEYYRP TSKTKYDISSYIKERLGISKVNEEFELVKKRTLLVLGADKWEDIPKDVLLNSLNLIDESIRIIKSERKTNQISFFEKDNF C >Mature_241_residues MNEIMTNENLRVVADDLVTVYETDTGEKIVFARELHNNLEVKRQFIDWIEDRIKQYGFKENEDYSVFHKNMKNSTGGRPS KEYVLKLDVAKELAMVQNNNKGREIRRYFIRLEKLLNRTLSNSQLSQINTIVNESLLKMEVKHNIQMEQLKKECSEYYRP TSKTKYDISSYIKERLGISKVNEEFELVKKRTLLVLGADKWEDIPKDVLLNSLNLIDESIRIIKSERKTNQISFFEKDNF C
Specific function: Unknown
COG id: COG3561
COG function: function code K; Phage anti-repressor protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013557 - InterPro: IPR018876 [H]
Pfam domain/function: PF08346 AntA; PF10548 P22_AR_C [H]
EC number: NA
Molecular weight: Translated: 28542; Mature: 28542
Theoretical pI: Translated: 8.59; Mature: 8.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEIMTNENLRVVADDLVTVYETDTGEKIVFARELHNNLEVKRQFIDWIEDRIKQYGFKE CCCCCCCCCCEEEHHHHEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NEDYSVFHKNMKNSTGGRPSKEYVLKLDVAKELAMVQNNNKGREIRRYFIRLEKLLNRTL CCCHHHHHHHHCCCCCCCCCHHHEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH SNSQLSQINTIVNESLLKMEVKHNIQMEQLKKECSEYYRPTSKTKYDISSYIKERLGISK CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHH VNEEFELVKKRTLLVLGADKWEDIPKDVLLNSLNLIDESIRIIKSERKTNQISFFEKDNF HHHHHHHHHHHHEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC C C >Mature Secondary Structure MNEIMTNENLRVVADDLVTVYETDTGEKIVFARELHNNLEVKRQFIDWIEDRIKQYGFKE CCCCCCCCCCEEEHHHHEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NEDYSVFHKNMKNSTGGRPSKEYVLKLDVAKELAMVQNNNKGREIRRYFIRLEKLLNRTL CCCHHHHHHHHCCCCCCCCCHHHEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH SNSQLSQINTIVNESLLKMEVKHNIQMEQLKKECSEYYRPTSKTKYDISSYIKERLGISK CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHH VNEEFELVKKRTLLVLGADKWEDIPKDVLLNSLNLIDESIRIIKSERKTNQISFFEKDNF HHHHHHHHHHHHEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC C C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]