| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698489
Identifier: 126698489
GI number: 126698489
Start: 1096496
End: 1096825
Strand: Direct
Name: 126698489
Synonym: CD0912
Alternate gene names: NA
Gene position: 1096496-1096825 (Clockwise)
Preceding gene: 126698488
Following gene: 126698490
Centisome position: 25.56
GC content: 29.39
Gene sequence:
>330_bases ATGAGTGTAGCATTACAATTCATAGACACAAAAGACTTAGTACAAGAGCTAATGCAAAGAGATGATACAACAGACATCAT CAAGATGTTTTTAGATAGAGAAGGAATTAAAAGGATGGAGTTAATGACTATAGAAGAATTTTGTGAGTACTTGAAAATAT CTGATGTAACAGCTAGAAACATGGCAAGAGAAGCCATGATAACAAAAGATTTTATTGCTTTAAAAATAGGAAGAAAGTAC ATGATTGATAGAATATCATTTGAAGAATTTATTATGAAAAATGCAATGAAAGATAAAGATGTAATGAAAAAAAGAAAGGG GGTGATTTAG
Upstream 100 bases:
>100_bases GAAAATAAAAATCCAACTATAGATACATTAATAAAAATAGCTGACTATTTAGACGTTACATTAGACGAACTAGTTGGAAG ATAGAAGGGGTGAGATAAAA
Downstream 100 bases:
>100_bases TTGAATGTAAGAGTACTAATAGCTTATGTACAATTCTGTAAGCAATATAATAAGAATGCAAGTTTTGAAGGTCTTAAAAA ATACAACAAAGGGGTAATTG
Product: phage DNA-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 109; Mature: 108
Protein sequence:
>109_residues MSVALQFIDTKDLVQELMQRDDTTDIIKMFLDREGIKRMELMTIEEFCEYLKISDVTARNMAREAMITKDFIALKIGRKY MIDRISFEEFIMKNAMKDKDVMKKRKGVI
Sequences:
>Translated_109_residues MSVALQFIDTKDLVQELMQRDDTTDIIKMFLDREGIKRMELMTIEEFCEYLKISDVTARNMAREAMITKDFIALKIGRKY MIDRISFEEFIMKNAMKDKDVMKKRKGVI >Mature_108_residues SVALQFIDTKDLVQELMQRDDTTDIIKMFLDREGIKRMELMTIEEFCEYLKISDVTARNMAREAMITKDFIALKIGRKYM IDRISFEEFIMKNAMKDKDVMKKRKGVI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12955; Mature: 12823
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 10.1 %Met (Translated Protein) 11.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 9.3 %Met (Mature Protein) 10.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVALQFIDTKDLVQELMQRDDTTDIIKMFLDREGIKRMELMTIEEFCEYLKISDVTARN CCCCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHH MAREAMITKDFIALKIGRKYMIDRISFEEFIMKNAMKDKDVMKKRKGVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC >Mature Secondary Structure SVALQFIDTKDLVQELMQRDDTTDIIKMFLDREGIKRMELMTIEEFCEYLKISDVTARN CCCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHH MAREAMITKDFIALKIGRKYMIDRISFEEFIMKNAMKDKDVMKKRKGVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA