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The map label for this gene is ymdB [C]

Identifier: 126698442

GI number: 126698442

Start: 1041845

End: 1042699

Strand: Direct

Name: ymdB [C]

Synonym: CD0865

Alternate gene names: 126698442

Gene position: 1041845-1042699 (Clockwise)

Preceding gene: 126698441

Following gene: 126698443

Centisome position: 24.28

GC content: 29.59

Gene sequence:

>855_bases
ATGAAGTGGAGAGATTATGCTGCTGATGTAAATTTATTTGAGGATTTTGATAAAACTATCAAGCCTCTAACTGACGAACA
AAGAAGAAAAAATATAAACACTTTAATTGCATATTTTTCAAAAGAAGTTCCTTCTAAAATATACAATTTATCAAATGATG
AAATTAAGCCTAGAGATATACTTAGAGGACTTTTGAATGTATATCCACCAAAAGAAATTGCTCCAGAGATACTTAATATG
TTACATAATTTATTGTTGATTGAATGTGAAGAAAGAGAGTTAGTAGATGTAAATGATATAGAAGAAATAGAGGAAGGGAT
TGCCATATGGAGAGGTAATATAACGAATTTAAGAGCAGATGCAATAGTAAATGCTGCAAATAACAAGTTATTAGGGTGTT
TACAACCATTACATCTATGCGTGGATAATGAAATACATTCATGCGCAGGTCCTAGACTTAGAGAAGATTGTGACAAAATA
ATAAAAAAACAAGGGCATTTAGAATATACTGGAGATGCTAAGATAACTAGAGGTTATTGTTTACCTGCAAAATTTGTAGT
ACATACTGTTGGACCTATTGTATCTGGTGGTCAGCCAAGTAAAGAGCAAGAAAAGCAACTGCTTCATTGTTATAAATCAT
GTTTAAATACAATAAAAGAAATTGATGAAATAAAAAATATTGTTTTTTGTGGAATTTCTACAGGTGTATTTGGTTATCCA
AAAAAAGAGGCAGCTAATCTTGCTGTAAGTAGAGTTAGACTATGGCTAAAAGAAAATCCTGAAAAAAATTTAAAAGTTGT
ATTTAATGTGTTTACTGAAGAAGAAGAAGAGAAATATAGAAGAATATTTAAATAA

Upstream 100 bases:

>100_bases
CTTTTAACAGGATTTATGTAGGTGTTTATAGAAATAAATAAATATGTACATAAATACATAATTATTTTTAAGTCTAAAAT
ACAAGAATGGAGAGATGGCT

Downstream 100 bases:

>100_bases
TATTATGTAACAGAATCCTAAAAATACTTATTATATAATACAAATTCATTGTATAAGATAATAATTTACAAGTAGTAAAA
ATTAATAAAATATAATTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MKWRDYAADVNLFEDFDKTIKPLTDEQRRKNINTLIAYFSKEVPSKIYNLSNDEIKPRDILRGLLNVYPPKEIAPEILNM
LHNLLLIECEERELVDVNDIEEIEEGIAIWRGNITNLRADAIVNAANNKLLGCLQPLHLCVDNEIHSCAGPRLREDCDKI
IKKQGHLEYTGDAKITRGYCLPAKFVVHTVGPIVSGGQPSKEQEKQLLHCYKSCLNTIKEIDEIKNIVFCGISTGVFGYP
KKEAANLAVSRVRLWLKENPEKNLKVVFNVFTEEEEEKYRRIFK

Sequences:

>Translated_284_residues
MKWRDYAADVNLFEDFDKTIKPLTDEQRRKNINTLIAYFSKEVPSKIYNLSNDEIKPRDILRGLLNVYPPKEIAPEILNM
LHNLLLIECEERELVDVNDIEEIEEGIAIWRGNITNLRADAIVNAANNKLLGCLQPLHLCVDNEIHSCAGPRLREDCDKI
IKKQGHLEYTGDAKITRGYCLPAKFVVHTVGPIVSGGQPSKEQEKQLLHCYKSCLNTIKEIDEIKNIVFCGISTGVFGYP
KKEAANLAVSRVRLWLKENPEKNLKVVFNVFTEEEEEKYRRIFK
>Mature_284_residues
MKWRDYAADVNLFEDFDKTIKPLTDEQRRKNINTLIAYFSKEVPSKIYNLSNDEIKPRDILRGLLNVYPPKEIAPEILNM
LHNLLLIECEERELVDVNDIEEIEEGIAIWRGNITNLRADAIVNAANNKLLGCLQPLHLCVDNEIHSCAGPRLREDCDKI
IKKQGHLEYTGDAKITRGYCLPAKFVVHTVGPIVSGGQPSKEQEKQLLHCYKSCLNTIKEIDEIKNIVFCGISTGVFGYP
KKEAANLAVSRVRLWLKENPEKNLKVVFNVFTEEEEEKYRRIFK

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI13569840, Length=180, Percent_Identity=42.7777777777778, Blast_Score=134, Evalue=7e-32,
Organism=Homo sapiens, GI117968621, Length=171, Percent_Identity=42.6900584795322, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI207450721, Length=183, Percent_Identity=32.7868852459016, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI8923143, Length=183, Percent_Identity=32.7868852459016, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI154813199, Length=154, Percent_Identity=30.5194805194805, Blast_Score=69, Evalue=5e-12,
Organism=Escherichia coli, GI1787283, Length=181, Percent_Identity=39.7790055248619, Blast_Score=106, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17538214, Length=179, Percent_Identity=37.4301675977654, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24586353, Length=157, Percent_Identity=33.1210191082803, Blast_Score=82, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 32625; Mature: 32625

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWRDYAADVNLFEDFDKTIKPLTDEQRRKNINTLIAYFSKEVPSKIYNLSNDEIKPRDI
CCCCHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
LRGLLNVYPPKEIAPEILNMLHNLLLIECEERELVDVNDIEEIEEGIAIWRGNITNLRAD
HHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHH
AIVNAANNKLLGCLQPLHLCVDNEIHSCAGPRLREDCDKIIKKQGHLEYTGDAKITRGYC
HHHHHCCCHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCEECCCCCEECCCC
LPAKFVVHTVGPIVSGGQPSKEQEKQLLHCYKSCLNTIKEIDEIKNIVFCGISTGVFGYP
CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCC
KKEAANLAVSRVRLWLKENPEKNLKVVFNVFTEEEEEKYRRIFK
CHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure
MKWRDYAADVNLFEDFDKTIKPLTDEQRRKNINTLIAYFSKEVPSKIYNLSNDEIKPRDI
CCCCHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
LRGLLNVYPPKEIAPEILNMLHNLLLIECEERELVDVNDIEEIEEGIAIWRGNITNLRAD
HHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHH
AIVNAANNKLLGCLQPLHLCVDNEIHSCAGPRLREDCDKIIKKQGHLEYTGDAKITRGYC
HHHHHCCCHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCEECCCCCEECCCC
LPAKFVVHTVGPIVSGGQPSKEQEKQLLHCYKSCLNTIKEIDEIKNIVFCGISTGVFGYP
CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCC
KKEAANLAVSRVRLWLKENPEKNLKVVFNVFTEEEEEKYRRIFK
CHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA