| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is yvyE [H]
Identifier: 126698371
GI number: 126698371
Start: 963449
End: 964093
Strand: Direct
Name: yvyE [H]
Synonym: CD0791
Alternate gene names: 126698371
Gene position: 963449-964093 (Clockwise)
Preceding gene: 126698370
Following gene: 126698374
Centisome position: 22.46
GC content: 30.7
Gene sequence:
>645_bases ATGAGCAATTACAGGACATTACATGAATTTGGAACGGATGAAATAACGATTGAAAAGTCTGTTTTTATTGGATATGCTAA GCCTATAAAGAGTGAAGAAGAAGCATTAGAGTTTATAAATGAAATAAAGAAAAAGCATAAAGATGCAACTCACAATGTGT GGGCTTATACTGTAGGTAAAAATATGAATATACAAAGATATAGTGATGATGGAGAACCACAAGGAACAGCTGGGATACCT ACATTAGAGGTTATAAAAAAAGAAGATTTGAGAGATGTAGCGGTTGTTGTTACTAGGTATTTTGGAGGAACAAAATTAGG TGCAGGTGGTCTAGTTAGAGCTTATACAAAAGGTGCTAAACTGGGACTTGAAGCAGGTAAGATAATTTATAAGGTAATGT ATCAAGAAGTTAAGGTTAAGATAGATTATACTCAACTTGGAAAAGTGCAAAATGAGTTAATGAATTTGGGGTATTTTATA AAAGATACTGTATATGAGGATAATGTTGAAATAGTAGTATATTCAAGATTAGAAGATGTAGAGAAATTATCAGAAAAAAT GATTGATATAACAAGTGGAACAGGAAAAATAGTTTTAGGAGAGGAATTTTATTTGTCTGAACAAAATGGAGAAATTTTAA TATAA
Upstream 100 bases:
>100_bases TAAAGAATTATTAAAAGTCCATTTATTTTTAAATAGAATAATTTTATAAATATATATTTGATGTGTATATTAGAAAATGA TTAAAATAGGAGGAAATACA
Downstream 100 bases:
>100_bases TCTAAAAGGTTATTAGAATAGTTAATACCTCAAATAGCCAATTAGTATTTTTAAGTGAAAAGCCATTAAATTGATTTAAT CTAAATCAATTTAATGGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MSNYRTLHEFGTDEITIEKSVFIGYAKPIKSEEEALEFINEIKKKHKDATHNVWAYTVGKNMNIQRYSDDGEPQGTAGIP TLEVIKKEDLRDVAVVVTRYFGGTKLGAGGLVRAYTKGAKLGLEAGKIIYKVMYQEVKVKIDYTQLGKVQNELMNLGYFI KDTVYEDNVEIVVYSRLEDVEKLSEKMIDITSGTGKIVLGEEFYLSEQNGEILI
Sequences:
>Translated_214_residues MSNYRTLHEFGTDEITIEKSVFIGYAKPIKSEEEALEFINEIKKKHKDATHNVWAYTVGKNMNIQRYSDDGEPQGTAGIP TLEVIKKEDLRDVAVVVTRYFGGTKLGAGGLVRAYTKGAKLGLEAGKIIYKVMYQEVKVKIDYTQLGKVQNELMNLGYFI KDTVYEDNVEIVVYSRLEDVEKLSEKMIDITSGTGKIVLGEEFYLSEQNGEILI >Mature_213_residues SNYRTLHEFGTDEITIEKSVFIGYAKPIKSEEEALEFINEIKKKHKDATHNVWAYTVGKNMNIQRYSDDGEPQGTAGIPT LEVIKKEDLRDVAVVVTRYFGGTKLGAGGLVRAYTKGAKLGLEAGKIIYKVMYQEVKVKIDYTQLGKVQNELMNLGYFIK DTVYEDNVEIVVYSRLEDVEKLSEKMIDITSGTGKIVLGEEFYLSEQNGEILI
Specific function: Unknown
COG id: COG1739
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the IMPACT family [H]
Homologues:
Organism=Escherichia coli, GI87082338, Length=188, Percent_Identity=31.9148936170213, Blast_Score=74, Evalue=5e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR020568 - InterPro: IPR000640 - InterPro: IPR015796 - InterPro: IPR015269 - InterPro: IPR020569 - InterPro: IPR001498 [H]
Pfam domain/function: PF09186 DUF1949; PF01205 UPF0029 [H]
EC number: NA
Molecular weight: Translated: 24164; Mature: 24033
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNYRTLHEFGTDEITIEKSVFIGYAKPIKSEEEALEFINEIKKKHKDATHNVWAYTVGK CCCCCCHHHCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECC NMNIQRYSDDGEPQGTAGIPTLEVIKKEDLRDVAVVVTRYFGGTKLGAGGLVRAYTKGAK CCEEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCEECCCCCHHHHHCCCC LGLEAGKIIYKVMYQEVKVKIDYTQLGKVQNELMNLGYFIKDTVYEDNVEIVVYSRLEDV CCCHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHCCHHHECCEECCCEEEEEEHHHHHH EKLSEKMIDITSGTGKIVLGEEFYLSEQNGEILI HHHHHHHEEEECCCCEEEECCEEEEECCCCCEEC >Mature Secondary Structure SNYRTLHEFGTDEITIEKSVFIGYAKPIKSEEEALEFINEIKKKHKDATHNVWAYTVGK CCCCCHHHCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECC NMNIQRYSDDGEPQGTAGIPTLEVIKKEDLRDVAVVVTRYFGGTKLGAGGLVRAYTKGAK CCEEEEECCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCEECCCCCHHHHHCCCC LGLEAGKIIYKVMYQEVKVKIDYTQLGKVQNELMNLGYFIKDTVYEDNVEIVVYSRLEDV CCCHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHCCHHHECCEECCCEEEEEEHHHHHH EKLSEKMIDITSGTGKIVLGEEFYLSEQNGEILI HHHHHHHEEEECCCCEEEECCEEEEECCCCCEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 3141378; 8313894 [H]