| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is srlB [H]
Identifier: 126698347
GI number: 126698347
Start: 938699
End: 939064
Strand: Direct
Name: srlB [H]
Synonym: CD0767
Alternate gene names: 126698347
Gene position: 938699-939064 (Clockwise)
Preceding gene: 126698346
Following gene: 126698348
Centisome position: 21.88
GC content: 26.23
Gene sequence:
>366_bases ATGGAATTAATATACAGTACTCAAATAAATAAAATAGGAGATAATGCAAATGAATTTTTACAACATAATATGTTTGTAAC TTTCAAAGATAATGCTCCTCAAGAGTTAGAAAATTACTGTTATATACATTCTGAAAATAATTTAGTAAAAGAAATACTTA CGGATGATGTGCTATCAATAAATAATGTTGATTACAAAATTACTTCTGTTGGTGAGTTAGTAAACCAAAATCTTTCAGAA TTAGGTCATATAACATTTAAGTTTACAGGTGAAAAAGATGGAGCAATTGGAGGAACCTTATATCTTGAAGAAAAAGAAAT AGCACCTATTGGCGTAGGTACTATACTAAAAATAATTAGAAAATAA
Upstream 100 bases:
>100_bases TTAACAGGTGCACCAACTGTTCTATTAGCATGGTTAGCAAGCTTTGGGTTATATAAATAGAAGAATACTTTATAAATAAT TAGAGAGAGGTTCAGTTGAT
Downstream 100 bases:
>100_bases AATTTAAAACGAATCTAATCATATTATAAGTAAATTATAGATAAAAGTCAATTTAACTAATCAAGTTAACTTTTAATGTG ATAAAAAAGGGGAAATGAAA
Product: PTS system glucitol/sorbitol-specific transporter subunit IIA
Products: Protein Histidine; Sugar Phosphate. [C]
Alternate protein names: EIIA-Gut; EIII-Gut; PTS system glucitol/sorbitol-specific EIIA component [H]
Number of amino acids: Translated: 121; Mature: 121
Protein sequence:
>121_residues MELIYSTQINKIGDNANEFLQHNMFVTFKDNAPQELENYCYIHSENNLVKEILTDDVLSINNVDYKITSVGELVNQNLSE LGHITFKFTGEKDGAIGGTLYLEEKEIAPIGVGTILKIIRK
Sequences:
>Translated_121_residues MELIYSTQINKIGDNANEFLQHNMFVTFKDNAPQELENYCYIHSENNLVKEILTDDVLSINNVDYKITSVGELVNQNLSE LGHITFKFTGEKDGAIGGTLYLEEKEIAPIGVGTILKIIRK >Mature_121_residues MELIYSTQINKIGDNANEFLQHNMFVTFKDNAPQELENYCYIHSENNLVKEILTDDVLSINNVDYKITSVGELVNQNLSE LGHITFKFTGEKDGAIGGTLYLEEKEIAPIGVGTILKIIRK
Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This
COG id: COG3731
COG function: function code G; Phosphotransferase system sorbitol-specific component IIA
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIA type-5 domain [H]
Homologues:
Organism=Escherichia coli, GI1789056, Length=117, Percent_Identity=35.042735042735, Blast_Score=87, Evalue=5e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004716 - InterPro: IPR018454 - ProDom: PD015842 [H]
Pfam domain/function: PF03829 PTSIIA_gutA [H]
EC number: 2.7.1.69 [C]
Molecular weight: Translated: 13651; Mature: 13651
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: PS51097 PTS_EIIA_TYPE_5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELIYSTQINKIGDNANEFLQHNMFVTFKDNAPQELENYCYIHSENNLVKEILTDDVLSI CCEEECCCCCCCCCCHHHHHHCCEEEEECCCCCHHHHCEEEEECCCCHHHHHHHCCCEEC NNVDYKITSVGELVNQNLSELGHITFKFTGEKDGAIGGTLYLEEKEIAPIGVGTILKIIR CCCCEEEHHHHHHHHHHHHHCCEEEEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHC K C >Mature Secondary Structure MELIYSTQINKIGDNANEFLQHNMFVTFKDNAPQELENYCYIHSENNLVKEILTDDVLSI CCEEECCCCCCCCCCHHHHHHCCEEEEECCCCCHHHHCEEEEECCCCHHHHHHHCCCEEC NNVDYKITSVGELVNQNLSELGHITFKFTGEKDGAIGGTLYLEEKEIAPIGVGTILKIIR CCCCEEEHHHHHHHHHHHHHCCEEEEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHC K C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Protein N-Phosphohistidine; Sugar [C]
Specific reaction: Protein N-Phosphohistidine + Sugar = Protein Histidine + Sugar Phosphate. [C]
General reaction: Transferases; Transferring phosphorus-containing groups [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3553176; 1630305; 9205837; 9278503 [H]