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The map label for this gene is yciR [C]

Identifier: 126698337

GI number: 126698337

Start: 926372

End: 928042

Strand: Direct

Name: yciR [C]

Synonym: CD0757

Alternate gene names: 126698337

Gene position: 926372-928042 (Clockwise)

Preceding gene: 126698336

Following gene: 126698340

Centisome position: 21.59

GC content: 26.99

Gene sequence:

>1671_bases
ATGAGAGAAGAATCGAACTCTTTAAGTTTAGACCATATAGAAATTTTCTTTGAACTTTTATCTCAAAGTACAGAAGATTA
TATATTTTTTTGGGATATAAATAGGAATAAATTTAAAATTTCTTCAGCAATTTTTGATGAATTTAACTTAAGTAAAGAGA
TAGAATCTGATTTGGTCAATTGTTGGAGTAAAATTGTTTATCCAGATGATGTTCAAATATGGAAAGATGATATACAAGAA
TTACTACATGGAAAAAAAGGTGAGCACAATTTAGAATATAGGTTGATTAATAAATATAAAGAAATAGTATGGATTTCTTG
TAGAGGTAAAGTTTATGTGTCGGATGACCCAAAAACTATATTTCTAGTCGGGAGAATAAAGAATATTGGTGAAAAAAATA
AATTTGATTCTATCACAGGAACGTGGAATAGAGAACAATTTGAACATAGAATGAATTATCTTATAAAAGAGAAAATTTAT
AAAAATGGTGCTATGTTTATTATGGATATTGATAATTTTAAAAATATAAATGAAAAATATGGACATTCTTATGGTGACAA
AGTATTGCGTGCAATTGCTACTGAAGTATTAGAATATCTTCCAAAAGATGTAAGATTGTATAGGTTAGATGGAGATGAAT
TTGCATTTTTTTACCCTATGTGTACTAAAGAAACTATAGAGAAAATATATGAAAAGATACAGATGTATACAAATACTCAG
CATGAAATTGAATCAAATAAGTACTATTGCACAGTGACTGCAGGCGTTGCTATGTATCCAGAAGATGGAGATAATTATTT
AGATTTATTTAAACATGCTGATATTGCATTGGATATAGCAAAAATTAGTGGTAAAAATAGAATTAAGTTTTTTTCACAAG
AGCTCTATGAAAATAAACTAAAGGTAATTTCAATGCAACAAAAACTAAGAGAGTGCGTTGAAAATAATTTTAATGACTTT
GAGCTGTTTTTTCAACCCCAGGTAAATGCTGTTACAAAAGAGGTAATAGGGGCAGAGGTACTTTTAAGATGGCATTCGAG
TACTTATGGAGAAGTATCTCCTGTTGAATTTATACCAATACTAGAACAGAGTAATTTAATTATACCAGTTGGGAAGTGGA
TTATAAAAGAAGCTGTAAAACAGTGTAAAGAATGGCATAAAATAAATCCAGACTTTAAAATATCTGTAAATGTATCGTAT
ATTCAGTTAAAGGAAGATTTTTTTAGAGATTTTATAGTAGAATGTTTAGTAGAGTATCAATTAAGACCTGAATTTTTAAT
TTTGGAATTAACAGAGAATTGTTGGATACCAGATATAAATTTACTAAATGATAAATTTATTAGTTTAAAGGGTATAGGAG
TATATATTGCAATAGATGACTTTGGTACAGGATATTCATCTTTAAATTACCTTAAAGAACTGTCTGTTAATATAATAAAA
ATTGAAAGAAGTTTTGTTAAGAATATTACATATAATAGTTATGAATATACTTTTCTTGAATATATTATTAAATTAGCTCA
TATTATAAATTTAAAAGTTTGTGTTGAGGGAATAGAGTCTTATGAAGAGTATGATATAGTAAAAAGCTTAGGGGTAGATA
TTATTCAGGGTTTTTTATTTGGAAGACCTGTAAGTGCCTCTGAATTTTATAAATTTCAACTATCAAAGTGA

Upstream 100 bases:

>100_bases
AATGTGTTTGATGAGACAAAAAATTAGTAAAATAGTATAATCTAAATAAGGATATTTTGTTGATTAAACTACACTAATAG
TAATATTGTAGGGGGAAAAG

Downstream 100 bases:

>100_bases
TGTATATAAAATGAGATATATAGTATATAAAAATAGGGCAAAGTGGAAGTTTTGAAGTTTATTAAAAATTTACACTTTAC
CCTATTTTGTTATGTCTTCT

Product: signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 556; Mature: 556

Protein sequence:

>556_residues
MREESNSLSLDHIEIFFELLSQSTEDYIFFWDINRNKFKISSAIFDEFNLSKEIESDLVNCWSKIVYPDDVQIWKDDIQE
LLHGKKGEHNLEYRLINKYKEIVWISCRGKVYVSDDPKTIFLVGRIKNIGEKNKFDSITGTWNREQFEHRMNYLIKEKIY
KNGAMFIMDIDNFKNINEKYGHSYGDKVLRAIATEVLEYLPKDVRLYRLDGDEFAFFYPMCTKETIEKIYEKIQMYTNTQ
HEIESNKYYCTVTAGVAMYPEDGDNYLDLFKHADIALDIAKISGKNRIKFFSQELYENKLKVISMQQKLRECVENNFNDF
ELFFQPQVNAVTKEVIGAEVLLRWHSSTYGEVSPVEFIPILEQSNLIIPVGKWIIKEAVKQCKEWHKINPDFKISVNVSY
IQLKEDFFRDFIVECLVEYQLRPEFLILELTENCWIPDINLLNDKFISLKGIGVYIAIDDFGTGYSSLNYLKELSVNIIK
IERSFVKNITYNSYEYTFLEYIIKLAHIINLKVCVEGIESYEEYDIVKSLGVDIIQGFLFGRPVSASEFYKFQLSK

Sequences:

>Translated_556_residues
MREESNSLSLDHIEIFFELLSQSTEDYIFFWDINRNKFKISSAIFDEFNLSKEIESDLVNCWSKIVYPDDVQIWKDDIQE
LLHGKKGEHNLEYRLINKYKEIVWISCRGKVYVSDDPKTIFLVGRIKNIGEKNKFDSITGTWNREQFEHRMNYLIKEKIY
KNGAMFIMDIDNFKNINEKYGHSYGDKVLRAIATEVLEYLPKDVRLYRLDGDEFAFFYPMCTKETIEKIYEKIQMYTNTQ
HEIESNKYYCTVTAGVAMYPEDGDNYLDLFKHADIALDIAKISGKNRIKFFSQELYENKLKVISMQQKLRECVENNFNDF
ELFFQPQVNAVTKEVIGAEVLLRWHSSTYGEVSPVEFIPILEQSNLIIPVGKWIIKEAVKQCKEWHKINPDFKISVNVSY
IQLKEDFFRDFIVECLVEYQLRPEFLILELTENCWIPDINLLNDKFISLKGIGVYIAIDDFGTGYSSLNYLKELSVNIIK
IERSFVKNITYNSYEYTFLEYIIKLAHIINLKVCVEGIESYEEYDIVKSLGVDIIQGFLFGRPVSASEFYKFQLSK
>Mature_556_residues
MREESNSLSLDHIEIFFELLSQSTEDYIFFWDINRNKFKISSAIFDEFNLSKEIESDLVNCWSKIVYPDDVQIWKDDIQE
LLHGKKGEHNLEYRLINKYKEIVWISCRGKVYVSDDPKTIFLVGRIKNIGEKNKFDSITGTWNREQFEHRMNYLIKEKIY
KNGAMFIMDIDNFKNINEKYGHSYGDKVLRAIATEVLEYLPKDVRLYRLDGDEFAFFYPMCTKETIEKIYEKIQMYTNTQ
HEIESNKYYCTVTAGVAMYPEDGDNYLDLFKHADIALDIAKISGKNRIKFFSQELYENKLKVISMQQKLRECVENNFNDF
ELFFQPQVNAVTKEVIGAEVLLRWHSSTYGEVSPVEFIPILEQSNLIIPVGKWIIKEAVKQCKEWHKINPDFKISVNVSY
IQLKEDFFRDFIVECLVEYQLRPEFLILELTENCWIPDINLLNDKFISLKGIGVYIAIDDFGTGYSSLNYLKELSVNIIK
IERSFVKNITYNSYEYTFLEYIIKLAHIINLKVCVEGIESYEEYDIVKSLGVDIIQGFLFGRPVSASEFYKFQLSK

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=480, Percent_Identity=28.9583333333333, Blast_Score=242, Evalue=4e-65,
Organism=Escherichia coli, GI87081921, Length=417, Percent_Identity=27.5779376498801, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI226510982, Length=302, Percent_Identity=32.1192052980132, Blast_Score=156, Evalue=4e-39,
Organism=Escherichia coli, GI87081980, Length=238, Percent_Identity=33.6134453781513, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI1790496, Length=250, Percent_Identity=30.4, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI87081743, Length=252, Percent_Identity=30.5555555555556, Blast_Score=132, Evalue=7e-32,
Organism=Escherichia coli, GI87081845, Length=267, Percent_Identity=31.0861423220974, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1786507, Length=273, Percent_Identity=29.6703296703297, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1788502, Length=239, Percent_Identity=29.7071129707113, Blast_Score=121, Evalue=9e-29,
Organism=Escherichia coli, GI1788849, Length=241, Percent_Identity=30.7053941908714, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI1787055, Length=404, Percent_Identity=25.990099009901, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI87082096, Length=394, Percent_Identity=25.8883248730964, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788381, Length=197, Percent_Identity=26.3959390862944, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1789650, Length=420, Percent_Identity=22.1428571428571, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081881, Length=159, Percent_Identity=34.5911949685535, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1786584, Length=154, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1787410, Length=153, Percent_Identity=28.7581699346405, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788956, Length=129, Percent_Identity=32.5581395348837, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787262, Length=212, Percent_Identity=24.5283018867925, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1788085, Length=161, Percent_Identity=27.9503105590062, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787816, Length=172, Percent_Identity=28.4883720930233, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 65568; Mature: 65568

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREESNSLSLDHIEIFFELLSQSTEDYIFFWDINRNKFKISSAIFDEFNLSKEIESDLVN
CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEHHHHHHHCCCHHHHHHHHHH
CWSKIVYPDDVQIWKDDIQELLHGKKGEHNLEYRLINKYKEIVWISCRGKVYVSDDPKTI
HHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEEEEECCEEEECCCCCEE
FLVGRIKNIGEKNKFDSITGTWNREQFEHRMNYLIKEKIYKNGAMFIMDIDNFKNINEKY
EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
GHSYGDKVLRAIATEVLEYLPKDVRLYRLDGDEFAFFYPMCTKETIEKIYEKIQMYTNTQ
CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCH
HEIESNKYYCTVTAGVAMYPEDGDNYLDLFKHADIALDIAKISGKNRIKFFSQELYENKL
HHCCCCCEEEEEEECEEECCCCCCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHH
KVISMQQKLRECVENNFNDFELFFQPQVNAVTKEVIGAEVLLRWHSSTYGEVSPVEFIPI
HHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEE
LEQSNLIIPVGKWIIKEAVKQCKEWHKINPDFKISVNVSYIQLKEDFFRDFIVECLVEYQ
ECCCCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHC
LRPEFLILELTENCWIPDINLLNDKFISLKGIGVYIAIDDFGTGYSSLNYLKELSVNIIK
CCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHCCCEEEE
IERSFVKNITYNSYEYTFLEYIIKLAHIINLKVCVEGIESYEEYDIVKSLGVDIIQGFLF
EEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHC
GRPVSASEFYKFQLSK
CCCCCCCCEEEEEECC
>Mature Secondary Structure
MREESNSLSLDHIEIFFELLSQSTEDYIFFWDINRNKFKISSAIFDEFNLSKEIESDLVN
CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEHHHHHHHCCCHHHHHHHHHH
CWSKIVYPDDVQIWKDDIQELLHGKKGEHNLEYRLINKYKEIVWISCRGKVYVSDDPKTI
HHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEEEEECCEEEECCCCCEE
FLVGRIKNIGEKNKFDSITGTWNREQFEHRMNYLIKEKIYKNGAMFIMDIDNFKNINEKY
EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
GHSYGDKVLRAIATEVLEYLPKDVRLYRLDGDEFAFFYPMCTKETIEKIYEKIQMYTNTQ
CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCH
HEIESNKYYCTVTAGVAMYPEDGDNYLDLFKHADIALDIAKISGKNRIKFFSQELYENKL
HHCCCCCEEEEEEECEEECCCCCCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHH
KVISMQQKLRECVENNFNDFELFFQPQVNAVTKEVIGAEVLLRWHSSTYGEVSPVEFIPI
HHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEE
LEQSNLIIPVGKWIIKEAVKQCKEWHKINPDFKISVNVSYIQLKEDFFRDFIVECLVEYQ
ECCCCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHC
LRPEFLILELTENCWIPDINLLNDKFISLKGIGVYIAIDDFGTGYSSLNYLKELSVNIIK
CCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHCCCEEEE
IERSFVKNITYNSYEYTFLEYIIKLAHIINLKVCVEGIESYEEYDIVKSLGVDIIQGFLF
EEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHC
GRPVSASEFYKFQLSK
CCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]