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The map label for this gene is ysgA [H]

Identifier: 126698277

GI number: 126698277

Start: 848362

End: 849042

Strand: Direct

Name: ysgA [H]

Synonym: CD0698

Alternate gene names: 126698277

Gene position: 848362-849042 (Clockwise)

Preceding gene: 126698276

Following gene: 126698278

Centisome position: 19.77

GC content: 28.49

Gene sequence:

>681_bases
ATGCTTGCACTTGAATGTATGGCAAACCTTGATTATGTATTTATCAATGAAGAATTTGAAAATAAGAAAGAACATGTAAA
ACTATTAGAAGATTTGGATAAAAAAAACACAAAGATATACAAGACTACTAATAAAAACTTTAAAGAATTAGTGGATACAG
AAAATACTCAAGGAATAATAGGTGTAGTTTCATTTAAGAAAAAAAAATTAAGTGAAAGTATAAATAAAAAAGATAAATTT
GTATTGATTTTAGACAGAATACAAGACCCAGGAAATATGGGGACTATAATAAGGACTGCTGATTCTGCTGGAGTAGATGC
CATAATAGCACTAAAGGGATGTGTCGATATATACAACCCAAAAGTAATTAGGTCTACTATGGGTTCTATTTTTGATATGA
ATATAATTGATGCTTCACAAGATGAAACTGTGGACATGCTTAAATCATTGGATTTTAATATAGTTTCAAGTTACTTAAAT
ACAGAAAATTTTTATGACAAAATAGATTATGGCTCAAAAGTAGCATTGGTGATAGGAAACGAAGCAAATGGAATAAATGA
AGAACTTGTATCAAAGTCTGATATTTTGGTTAAGATACCTATATATGGTAAAGCCGAGTCGTTAAATGCTGCGATAAGCT
CTGCTATACTGATGTATGAAATAAAAAAATACTTAATTTAA

Upstream 100 bases:

>100_bases
CAGTAAGGATAATGAAAAGTTAAAGTATACAAGAGCACTATTAAAATCAAAGAATAGGAATAAAGAGTCAAAGTTCATAA
TAGAAGGATACAGAATAGTA

Downstream 100 bases:

>100_bases
TGTATTGTAATAAATATAATGTCATGTTATAATCTTGAATTAAATAGTAGAGTATCAAAAATAGTCAATATATATTAAAA
AATAATTAAATTAATTATAT

Product: RNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MLALECMANLDYVFINEEFENKKEHVKLLEDLDKKNTKIYKTTNKNFKELVDTENTQGIIGVVSFKKKKLSESINKKDKF
VLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDMNIIDASQDETVDMLKSLDFNIVSSYLN
TENFYDKIDYGSKVALVIGNEANGINEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKKYLI

Sequences:

>Translated_226_residues
MLALECMANLDYVFINEEFENKKEHVKLLEDLDKKNTKIYKTTNKNFKELVDTENTQGIIGVVSFKKKKLSESINKKDKF
VLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDMNIIDASQDETVDMLKSLDFNIVSSYLN
TENFYDKIDYGSKVALVIGNEANGINEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKKYLI
>Mature_226_residues
MLALECMANLDYVFINEEFENKKEHVKLLEDLDKKNTKIYKTTNKNFKELVDTENTQGIIGVVSFKKKKLSESINKKDKF
VLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDMNIIDASQDETVDMLKSLDFNIVSSYLN
TENFYDKIDYGSKVALVIGNEANGINEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKKYLI

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=267, Percent_Identity=27.3408239700375, Blast_Score=92, Evalue=3e-19,
Organism=Escherichia coli, GI1790623, Length=214, Percent_Identity=28.0373831775701, Blast_Score=80, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 25356; Mature: 25356

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLALECMANLDYVFINEEFENKKEHVKLLEDLDKKNTKIYKTTNKNFKELVDTENTQGII
CEEHEECCCCCEEEECCHHCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCCCEE
GVVSFKKKKLSESINKKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNP
EEEHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEEEHHHHHHCCC
KVIRSTMGSIFDMNIIDASQDETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGN
HHHHHHHHHHEECEEECCCCCHHHHHHHHCCHHHHHHHHCCCHHHHHCCCCCEEEEEECC
EANGINEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKKYLI
CCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLALECMANLDYVFINEEFENKKEHVKLLEDLDKKNTKIYKTTNKNFKELVDTENTQGII
CEEHEECCCCCEEEECCHHCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCCCEE
GVVSFKKKKLSESINKKDKFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNP
EEEHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEEEHHHHHHCCC
KVIRSTMGSIFDMNIIDASQDETVDMLKSLDFNIVSSYLNTENFYDKIDYGSKVALVIGN
HHHHHHHHHHEECEEECCCCCHHHHHHHHCCHHHHHHHHCCCHHHHHCCCCCEEEEEECC
EANGINEELVSKSDILVKIPIYGKAESLNAAISSAILMYEIKKYLI
CCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]