| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698149
Identifier: 126698149
GI number: 126698149
Start: 680082
End: 680843
Strand: Direct
Name: 126698149
Synonym: CD0571
Alternate gene names: NA
Gene position: 680082-680843 (Clockwise)
Preceding gene: 126698148
Following gene: 126698150
Centisome position: 15.85
GC content: 27.3
Gene sequence:
>762_bases ATGGAATTTACAAGAGAACCATTTATACTAGATGACGATTTGTGTCTAGCTTTGGTGGACAAAAGAATTAGTTATCTAAT GGAAAATGAATTAAAATTAAGAAATATAGAGATAATAAAAACAATAGAATGTAAAGAATTATATGAAAGCATAAAATATC ACCCGGATATATGTATTTGTAATTTAGGAAAAGGAGATATAATTGTTGCGCCGAATGTATATAATCAATACAAAGAGTTA TTAAGTAGATATAAATTTAATATAATTAAGGGAGAAGCTAATTTATTAAATAGATACCCTTATGATATACCTTACAATAT TGCGATAGTTGGTGACTATGCTATACACAATTTTAAGTATACTGACAAAGCAATATTAGATTATATTGAAAATAATAAAC TTAAAAAGATAAATATAGAGCAGGGCTATTCTAAATGCTCAATCTGTATAGTAGATAGAACGTCTATAATAACATCAGAT AAAGGTATTTGGAAAAGTATGAAGAATACAGAAATAGAGTGTTTATTGATAGAAAAAGGTCACATAAATTTATTTGAGAT GAATTATGGATTTATAGGTGGATGTACAGGGTTGATTTCTAAGGATAAACTAGCTTTTTGTGGAGATGTTAAAAAACATC CTGACTATGAACGTATAAAAAGTTTTGTAGAAAGTAAAAACAAGGAGATAGTTACACTTAGCTGTGAAAATTTACTAGAT ATAGGTTCTATAGTTCCTCTCATGACAAGAAAGGAGCGATAA
Upstream 100 bases:
>100_bases TAAAATTATAACAATAAGTGTGTGGGCAGAAAAATTCTGCTACACACTTTATTTATATTCACATAAAAAATTTATCAAAA AAAAGAAAAAGGAGTAAAAA
Downstream 100 bases:
>100_bases CTTTGGTTGAGAAGGATAATATTTCTTCCATGAAATTTTTGAGGAATAATAATGTAAACGATAGATTAATATATACGAAT GACATTGTAGAAGTAGTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 253; Mature: 253
Protein sequence:
>253_residues MEFTREPFILDDDLCLALVDKRISYLMENELKLRNIEIIKTIECKELYESIKYHPDICICNLGKGDIIVAPNVYNQYKEL LSRYKFNIIKGEANLLNRYPYDIPYNIAIVGDYAIHNFKYTDKAILDYIENNKLKKINIEQGYSKCSICIVDRTSIITSD KGIWKSMKNTEIECLLIEKGHINLFEMNYGFIGGCTGLISKDKLAFCGDVKKHPDYERIKSFVESKNKEIVTLSCENLLD IGSIVPLMTRKER
Sequences:
>Translated_253_residues MEFTREPFILDDDLCLALVDKRISYLMENELKLRNIEIIKTIECKELYESIKYHPDICICNLGKGDIIVAPNVYNQYKEL LSRYKFNIIKGEANLLNRYPYDIPYNIAIVGDYAIHNFKYTDKAILDYIENNKLKKINIEQGYSKCSICIVDRTSIITSD KGIWKSMKNTEIECLLIEKGHINLFEMNYGFIGGCTGLISKDKLAFCGDVKKHPDYERIKSFVESKNKEIVTLSCENLLD IGSIVPLMTRKER >Mature_253_residues MEFTREPFILDDDLCLALVDKRISYLMENELKLRNIEIIKTIECKELYESIKYHPDICICNLGKGDIIVAPNVYNQYKEL LSRYKFNIIKGEANLLNRYPYDIPYNIAIVGDYAIHNFKYTDKAILDYIENNKLKKINIEQGYSKCSICIVDRTSIITSD KGIWKSMKNTEIECLLIEKGHINLFEMNYGFIGGCTGLISKDKLAFCGDVKKHPDYERIKSFVESKNKEIVTLSCENLLD IGSIVPLMTRKER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29325; Mature: 29325
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 4.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFTREPFILDDDLCLALVDKRISYLMENELKLRNIEIIKTIECKELYESIKYHPDICIC CCCCCCCEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECHHHHHHHHCCCCCEEEE NLGKGDIIVAPNVYNQYKELLSRYKFNIIKGEANLLNRYPYDIPYNIAIVGDYAIHNFKY ECCCCCEEECCCHHHHHHHHHHHHCEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECEEC TDKAILDYIENNKLKKINIEQGYSKCSICIVDRTSIITSDKGIWKSMKNTEIECLLIEKG CHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECCEEEECCCHHHHHCCCCCEEEEEEECC HINLFEMNYGFIGGCTGLISKDKLAFCGDVKKHPDYERIKSFVESKNKEIVTLSCENLLD CEEEEEECCCEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHH IGSIVPLMTRKER HHHHHHHHCCCCC >Mature Secondary Structure MEFTREPFILDDDLCLALVDKRISYLMENELKLRNIEIIKTIECKELYESIKYHPDICIC CCCCCCCEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECHHHHHHHHCCCCCEEEE NLGKGDIIVAPNVYNQYKELLSRYKFNIIKGEANLLNRYPYDIPYNIAIVGDYAIHNFKY ECCCCCEEECCCHHHHHHHHHHHHCEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECEEC TDKAILDYIENNKLKKINIEQGYSKCSICIVDRTSIITSDKGIWKSMKNTEIECLLIEKG CHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECCEEEECCCHHHHHCCCCCEEEEEEECC HINLFEMNYGFIGGCTGLISKDKLAFCGDVKKHPDYERIKSFVESKNKEIVTLSCENLLD CEEEEEECCCEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHH IGSIVPLMTRKER HHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA