| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126698111
Identifier: 126698111
GI number: 126698111
Start: 637587
End: 638084
Strand: Direct
Name: 126698111
Synonym: CD0532
Alternate gene names: NA
Gene position: 637587-638084 (Clockwise)
Preceding gene: 126698110
Following gene: 126698112
Centisome position: 14.86
GC content: 29.32
Gene sequence:
>498_bases ATGAATTATGAAATAGTAGAGATAAATGAGAAAATAGTTATAGGAATATCGAAGGAGACTACAAATAAAGATGGACAAGC GGTAAATGATATAGGTGAATTGTGGAAAAAATTTATGGGCAAAGGGATATATAATGCTATAAAGGGTAAAAAGAATGACA AGACAATAGGTCTATATACAGATTACCAGGGTGATTTTACAAGTCCGTATAGCTTTGTTGCATGTTGTGAAGTAAATAGT AATTCTGATAAAGAGAAGAATTTAGAAGAATTAAACACTAATAATACTGTTGGAGAAAGTATTATTAGTAAAGTTATACC AGCAGGTAAGTATGCAAAGTTTGTTATAGTAGGAGGTCAAAAAGAAGTAGGAGATTTTTGGTTTGAGTTTTGGCAAATGG ATTTTGATAGGACTTATATAAGTGATTTTGAAGAGTATCAATGTAATACTTTTGATACAAAGAAACAAGAAATTCATATT TACATAGGAATAAAGTAG
Upstream 100 bases:
>100_bases TTATATTAAAAATATGACATAAAGGTGTCGTATATTATAAATTATAATTGAATTAGTTCAAAATAAAATAGATTAATAAA AACAAAGTGAGGTATAAAGT
Downstream 100 bases:
>100_bases ATTTGTTATTACTATATTGAATGAAATATTGAGTATAGTACATTTATTATAGATAGTTTTATTATTTATAACTATAAGCA GTAAATCTGTAAAAGATTTA
Product: hypothetical protein
Products: NA
Alternate protein names: Transcriptional Regulator; AraC Family Transcriptional Regulator; Transcription Activator
Number of amino acids: Translated: 165; Mature: 165
Protein sequence:
>165_residues MNYEIVEINEKIVIGISKETTNKDGQAVNDIGELWKKFMGKGIYNAIKGKKNDKTIGLYTDYQGDFTSPYSFVACCEVNS NSDKEKNLEELNTNNTVGESIISKVIPAGKYAKFVIVGGQKEVGDFWFEFWQMDFDRTYISDFEEYQCNTFDTKKQEIHI YIGIK
Sequences:
>Translated_165_residues MNYEIVEINEKIVIGISKETTNKDGQAVNDIGELWKKFMGKGIYNAIKGKKNDKTIGLYTDYQGDFTSPYSFVACCEVNS NSDKEKNLEELNTNNTVGESIISKVIPAGKYAKFVIVGGQKEVGDFWFEFWQMDFDRTYISDFEEYQCNTFDTKKQEIHI YIGIK >Mature_165_residues MNYEIVEINEKIVIGISKETTNKDGQAVNDIGELWKKFMGKGIYNAIKGKKNDKTIGLYTDYQGDFTSPYSFVACCEVNS NSDKEKNLEELNTNNTVGESIISKVIPAGKYAKFVIVGGQKEVGDFWFEFWQMDFDRTYISDFEEYQCNTFDTKKQEIHI YIGIK
Specific function: Unknown
COG id: COG3708
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18940; Mature: 18940
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYEIVEINEKIVIGISKETTNKDGQAVNDIGELWKKFMGKGIYNAIKGKKNDKTIGLYT CCEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEEE DYQGDFTSPYSFVACCEVNSNSDKEKNLEELNTNNTVGESIISKVIPAGKYAKFVIVGGQ CCCCCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCC KEVGDFWFEFWQMDFDRTYISDFEEYQCNTFDTKKQEIHIYIGIK CHHHHHHHHHHHCCCCHHHHHCHHHHCCCCCCCCCEEEEEEEEEC >Mature Secondary Structure MNYEIVEINEKIVIGISKETTNKDGQAVNDIGELWKKFMGKGIYNAIKGKKNDKTIGLYT CCEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEEE DYQGDFTSPYSFVACCEVNSNSDKEKNLEELNTNNTVGESIISKVIPAGKYAKFVIVGGQ CCCCCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCC KEVGDFWFEFWQMDFDRTYISDFEEYQCNTFDTKKQEIHIYIGIK CHHHHHHHHHHHCCCCHHHHHCHHHHCCCCCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA