| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is spaK [H]
Identifier: 126698059
GI number: 126698059
Start: 570187
End: 571611
Strand: Direct
Name: spaK [H]
Synonym: CD0482
Alternate gene names: 126698059
Gene position: 570187-571611 (Clockwise)
Preceding gene: 126698058
Following gene: 126698065
Centisome position: 13.29
GC content: 32.21
Gene sequence:
>1425_bases ATGAAAAATCAATCCCTTATTACCCAATTTAGACATACTTTTATTTTTATTATAATAGCCAGTATAGTTGCCACAGTGAT TACTTATGTATTTGCTCTCTATTTGTATATTCATTCCTTAAATAAGGATATCTATCCACCAAACTATTATGAGCGACAAG TTCCTAGAATTGAAAAATACATCAATGAAAAAAACATAACTTTGTTATCACAATCGAATGAAGAAGGTTTAAAAAGAACG ATTCGTGGGGATGATATGCTATATCAAGTTGTGGATAATAATGGCAATATTTTATATGGTACTAACCCCAAAAAACTATT TAAAACAAAAGAAGAATTATTTAATAATTTTATCAATAAAACTGTTCGTAAAGGTGGTTATATCCATACTGTTCCAATCA AAGGGGATAATGGAAAGATTGAGGGAGCTGTTATTCTATTCTACCAAGTGAAAATCACCTTTGCAAATATTAGAGGGAGA TTTGTATTTGCAGTTATTATAATGGCTCTGTTTTCTCCATTTCTATATATCGTGGGTTTTACTAGATGGCTTTCTAAGCG CTTTGTAAAGAATATCAATCAACCATTACATCTATTGATTGATGCGTCCAAGAAGATAAAAGAAAAGGACCTTGATTTTG AAATCGACTATTATTCAGATAATGAACTCGGTAAACTTTGTAGTGCATTTTCTGAAATGAAAGACGAATTAAAAGGCTCT TTATCTGCACAGTGGAAGATGGAGCAGGAACGTGTTGAAATGGTGGAAGCTCTAGCACATGATTTAAAATCTCCTCTTTC TATTATTTTGGGATATACAGATGCACTTATTGGTAATAATACAGATGACAATGAAAAACTTCATAGGTATCTTACAGTGA TAAGAGAAAATACAGAAAAAAGTGCTGCTCTTGTCCAAAAGATGCAATATACGTCTGACTTAGAAAAGTCAAATATACAA TTAAATCTTGTTCCTATAAATTTACCTGAATTTTTGAGGCAAAAGGTGCAAGACTATGAATTACAGGCTCATCAAAAGGA AGTTGAACTTATATTGAAAATGCAGGGGAATATACAATCCCCAATTCAAATCGACGTGGATAGGTTGACACGAATTTTTG ATAATATCATATCCAACAGTCTGCAATACACTCCATCAGGTGGTAATATTAGTATTACTGTAAAGGATGAAAAAAATTGT ATTTCTTATGAGATTTGTGATTCTGGTAGAGGGTTTAGCTCTAAAGATTTAAAAAAGGCTCTTGATAAATTTTATCGAGG AGATGAAGCTAGGCAGACAAAAGGTGGACATTCTGGTCTTGGGCTTTACATTGTCAAACAATTAGTGGAACAGCTTGGAG GTTCTGTTAAAATAGAAAATTCAAAATCAGGTGGAGCATGTGTGAAATTTTGGCATAGCATTTAA
Upstream 100 bases:
>100_bases AGCTAAGTTTTCTGCTGTGACACCAGAAAAAGAATATATTTCCACAGTTTGGGGTATTGGGTATAAGTGGAATAAAATGT AAAGAGAGAGAGGTTATTAA
Downstream 100 bases:
>100_bases CTATATATTTTAAATTAAAGGGGAGTGTCTCAAAGCGAAATTTTTAATTCGTGAGGCACTCTTTTTTTGTGAAGTTAAAT ATATTTTCATTATTTCGACA
Product: lantibiotic resistance two-component sensor kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 474; Mature: 474
Protein sequence:
>474_residues MKNQSLITQFRHTFIFIIIASIVATVITYVFALYLYIHSLNKDIYPPNYYERQVPRIEKYINEKNITLLSQSNEEGLKRT IRGDDMLYQVVDNNGNILYGTNPKKLFKTKEELFNNFINKTVRKGGYIHTVPIKGDNGKIEGAVILFYQVKITFANIRGR FVFAVIIMALFSPFLYIVGFTRWLSKRFVKNINQPLHLLIDASKKIKEKDLDFEIDYYSDNELGKLCSAFSEMKDELKGS LSAQWKMEQERVEMVEALAHDLKSPLSIILGYTDALIGNNTDDNEKLHRYLTVIRENTEKSAALVQKMQYTSDLEKSNIQ LNLVPINLPEFLRQKVQDYELQAHQKEVELILKMQGNIQSPIQIDVDRLTRIFDNIISNSLQYTPSGGNISITVKDEKNC ISYEICDSGRGFSSKDLKKALDKFYRGDEARQTKGGHSGLGLYIVKQLVEQLGGSVKIENSKSGGACVKFWHSI
Sequences:
>Translated_474_residues MKNQSLITQFRHTFIFIIIASIVATVITYVFALYLYIHSLNKDIYPPNYYERQVPRIEKYINEKNITLLSQSNEEGLKRT IRGDDMLYQVVDNNGNILYGTNPKKLFKTKEELFNNFINKTVRKGGYIHTVPIKGDNGKIEGAVILFYQVKITFANIRGR FVFAVIIMALFSPFLYIVGFTRWLSKRFVKNINQPLHLLIDASKKIKEKDLDFEIDYYSDNELGKLCSAFSEMKDELKGS LSAQWKMEQERVEMVEALAHDLKSPLSIILGYTDALIGNNTDDNEKLHRYLTVIRENTEKSAALVQKMQYTSDLEKSNIQ LNLVPINLPEFLRQKVQDYELQAHQKEVELILKMQGNIQSPIQIDVDRLTRIFDNIISNSLQYTPSGGNISITVKDEKNC ISYEICDSGRGFSSKDLKKALDKFYRGDEARQTKGGHSGLGLYIVKQLVEQLGGSVKIENSKSGGACVKFWHSI >Mature_474_residues MKNQSLITQFRHTFIFIIIASIVATVITYVFALYLYIHSLNKDIYPPNYYERQVPRIEKYINEKNITLLSQSNEEGLKRT IRGDDMLYQVVDNNGNILYGTNPKKLFKTKEELFNNFINKTVRKGGYIHTVPIKGDNGKIEGAVILFYQVKITFANIRGR FVFAVIIMALFSPFLYIVGFTRWLSKRFVKNINQPLHLLIDASKKIKEKDLDFEIDYYSDNELGKLCSAFSEMKDELKGS LSAQWKMEQERVEMVEALAHDLKSPLSIILGYTDALIGNNTDDNEKLHRYLTVIRENTEKSAALVQKMQYTSDLEKSNIQ LNLVPINLPEFLRQKVQDYELQAHQKEVELILKMQGNIQSPIQIDVDRLTRIFDNIISNSLQYTPSGGNISITVKDEKNC ISYEICDSGRGFSSKDLKKALDKFYRGDEARQTKGGHSGLGLYIVKQLVEQLGGSVKIENSKSGGACVKFWHSI
Specific function: Member of the two-component regulatory system YycG/YycF involved in the regulation of the ftsAZ operon, the yocH and ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Probably phosphorylates YycF [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788393, Length=278, Percent_Identity=26.6187050359712, Blast_Score=106, Evalue=3e-24, Organism=Escherichia coli, GI1786600, Length=296, Percent_Identity=22.972972972973, Blast_Score=95, Evalue=1e-20, Organism=Escherichia coli, GI1789149, Length=338, Percent_Identity=21.8934911242604, Blast_Score=93, Evalue=4e-20, Organism=Escherichia coli, GI1787894, Length=278, Percent_Identity=23.7410071942446, Blast_Score=92, Evalue=9e-20, Organism=Escherichia coli, GI1786783, Length=262, Percent_Identity=24.8091603053435, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI1786912, Length=222, Percent_Identity=24.7747747747748, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1790861, Length=255, Percent_Identity=24.7058823529412, Blast_Score=79, Evalue=7e-16, Organism=Escherichia coli, GI48994928, Length=227, Percent_Identity=23.3480176211454, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI1790436, Length=219, Percent_Identity=25.1141552511416, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1789808, Length=316, Percent_Identity=21.8354430379747, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1788713, Length=220, Percent_Identity=21.8181818181818, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1790346, Length=244, Percent_Identity=24.1803278688525, Blast_Score=72, Evalue=7e-14, Organism=Escherichia coli, GI145693157, Length=239, Percent_Identity=19.6652719665272, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788279, Length=234, Percent_Identity=26.9230769230769, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1788549, Length=281, Percent_Identity=23.4875444839858, Blast_Score=63, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 54322; Mature: 54322
Theoretical pI: Translated: 9.13; Mature: 9.13
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNQSLITQFRHTFIFIIIASIVATVITYVFALYLYIHSLNKDIYPPNYYERQVPRIEKY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHH INEKNITLLSQSNEEGLKRTIRGDDMLYQVVDNNGNILYGTNPKKLFKTKEELFNNFINK HCCCCEEEEECCCHHHHHHHHCCCCEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHH TVRKGGYIHTVPIKGDNGKIEGAVILFYQVKITFANIRGRFVFAVIIMALFSPFLYIVGF HHHCCCCEEEEEEECCCCCCCEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH TRWLSKRFVKNINQPLHLLIDASKKIKEKDLDFEIDYYSDNELGKLCSAFSEMKDELKGS HHHHHHHHHHHCCCCCEEEEECHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC LSAQWKMEQERVEMVEALAHDLKSPLSIILGYTDALIGNNTDDNEKLHRYLTVIRENTEK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHH SAALVQKMQYTSDLEKSNIQLNLVPINLPEFLRQKVQDYELQAHQKEVELILKMQGNIQS HHHHHHHHHHHHCHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PIQIDVDRLTRIFDNIISNSLQYTPSGGNISITVKDEKNCISYEICDSGRGFSSKDLKKA CCEECHHHHHHHHHHHHCCCCEECCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHH LDKFYRGDEARQTKGGHSGLGLYIVKQLVEQLGGSVKIENSKSGGACVKFWHSI HHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCC >Mature Secondary Structure MKNQSLITQFRHTFIFIIIASIVATVITYVFALYLYIHSLNKDIYPPNYYERQVPRIEKY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHH INEKNITLLSQSNEEGLKRTIRGDDMLYQVVDNNGNILYGTNPKKLFKTKEELFNNFINK HCCCCEEEEECCCHHHHHHHHCCCCEEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHH TVRKGGYIHTVPIKGDNGKIEGAVILFYQVKITFANIRGRFVFAVIIMALFSPFLYIVGF HHHCCCCEEEEEEECCCCCCCEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH TRWLSKRFVKNINQPLHLLIDASKKIKEKDLDFEIDYYSDNELGKLCSAFSEMKDELKGS HHHHHHHHHHHCCCCCEEEEECHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC LSAQWKMEQERVEMVEALAHDLKSPLSIILGYTDALIGNNTDDNEKLHRYLTVIRENTEK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHH SAALVQKMQYTSDLEKSNIQLNLVPINLPEFLRQKVQDYELQAHQKEVELILKMQGNIQS HHHHHHHHHHHHCHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PIQIDVDRLTRIFDNIISNSLQYTPSGGNISITVKDEKNCISYEICDSGRGFSSKDLKKA CCEECHHHHHHHHHHHHCCCCEECCCCCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHH LDKFYRGDEARQTKGGHSGLGLYIVKQLVEQLGGSVKIENSKSGGACVKFWHSI HHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377; 9829949; 10878122; 11758928 [H]