| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is blaR1 [H]
Identifier: 126698034
GI number: 126698034
Start: 545446
End: 546318
Strand: Direct
Name: blaR1 [H]
Synonym: CD0458
Alternate gene names: 126698034
Gene position: 545446-546318 (Clockwise)
Preceding gene: 126698033
Following gene: 126698035
Centisome position: 12.71
GC content: 27.38
Gene sequence:
>873_bases ATGGGAGTATATTATGTAGGAAGAAAGCATAACAACACAAAACAAAAACATGATAAGAATCATATAAACTCTGAATTAAA TAAATCCAAAGTTGAAAACAAAAAAGAAAAAATTAATATGGTTGACTATAGTGATTGTTTTGAAGGTATTAGTGGAGGAG CTATTTTTTATAATACTAAAAATAAAGAATATAATATATATAACAAAGAATTAATTGAAACAAGAAGGTCACCATGTTCT ACTTTTAAAATAGTTTCAACTTTAATTGGTTTAGAAAAAGGGGTAATAAACTCAAAAGAATCAGTTATGGGATATGATGG TACAGAGTATCCAAATAAAAATTGGAATAAAAATCTTAGTTTAGAAGAGGCATTTAAGGAGTCTTGTGTTTGGTACTACA AAAAATTGATAGATAAAGTTGATGCTAAATCTGTCCAAAACATTTTAGATGATTTAAAGTATGGGAATTGCGATATTAGC GAATGGGAAGGCGATTTAAAAAATGGAAAGGGACATTTAAATGGATTTTGGTTAGAATCTTCATTACAAATATCTCCAAA AGAACAAGTGCAAACAATGGCAAAAATATTTGAGGGAGATACAAACTTTAAAAAAGAGCATATTAATATTTTAAGAGATA TTATGAAAATAGATGTAAATGATAAAAACATAAATGTATATGGAAAAACTGGAACAGGATTTGATGAAAAAAATAAACGT GTGGATGCATGGTTTGTTGGTATGCTAGAGCGTGAAGGTGACACCTATTATTTTGCTATTAAATCAGATGATTCCAATAA AGAAATTACAGGGCCAAAGGTAAAGGAAATTGCAATTAATATAATTAAGAAATATTATAGTGTAAGGGAATAA
Upstream 100 bases:
>100_bases TTTTAAAGGTGAACTATAAACTTATGTAGAGGAGATGGTATAAAGTATGAAAAGAAAAAATAATTTTATTTGGATAGTTA TTCTTCTAGTTGTTGTAGCT
Downstream 100 bases:
>100_bases ACTTAATTTTATTTGTAAATATTATTTACCTATAGTCTGTAATATTTATTAAATAATTTTACTAAATTGAGTCTATATAG AGCAAAACTCCTTTAGTACA
Product: beta-lactamase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MGVYYVGRKHNNTKQKHDKNHINSELNKSKVENKKEKINMVDYSDCFEGISGGAIFYNTKNKEYNIYNKELIETRRSPCS TFKIVSTLIGLEKGVINSKESVMGYDGTEYPNKNWNKNLSLEEAFKESCVWYYKKLIDKVDAKSVQNILDDLKYGNCDIS EWEGDLKNGKGHLNGFWLESSLQISPKEQVQTMAKIFEGDTNFKKEHINILRDIMKIDVNDKNINVYGKTGTGFDEKNKR VDAWFVGMLEREGDTYYFAIKSDDSNKEITGPKVKEIAINIIKKYYSVRE
Sequences:
>Translated_290_residues MGVYYVGRKHNNTKQKHDKNHINSELNKSKVENKKEKINMVDYSDCFEGISGGAIFYNTKNKEYNIYNKELIETRRSPCS TFKIVSTLIGLEKGVINSKESVMGYDGTEYPNKNWNKNLSLEEAFKESCVWYYKKLIDKVDAKSVQNILDDLKYGNCDIS EWEGDLKNGKGHLNGFWLESSLQISPKEQVQTMAKIFEGDTNFKKEHINILRDIMKIDVNDKNINVYGKTGTGFDEKNKR VDAWFVGMLEREGDTYYFAIKSDDSNKEITGPKVKEIAINIIKKYYSVRE >Mature_289_residues GVYYVGRKHNNTKQKHDKNHINSELNKSKVENKKEKINMVDYSDCFEGISGGAIFYNTKNKEYNIYNKELIETRRSPCST FKIVSTLIGLEKGVINSKESVMGYDGTEYPNKNWNKNLSLEEAFKESCVWYYKKLIDKVDAKSVQNILDDLKYGNCDISE WEGDLKNGKGHLNGFWLESSLQISPKEQVQTMAKIFEGDTNFKKEHINILRDIMKIDVNDKNINVYGKTGTGFDEKNKRV DAWFVGMLEREGDTYYFAIKSDDSNKEITGPKVKEIAINIIKKYYSVRE
Specific function: BlaR1 is a potential penicillin-binding protein required for induction of beta-lactamase in Bacillus licheniformis [H]
COG id: COG2602
COG function: function code V; Beta-lactamase class D
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M56 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001460 - InterPro: IPR008756 [H]
Pfam domain/function: PF05569 Peptidase_M56; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 33551; Mature: 33420
Theoretical pI: Translated: 8.50; Mature: 8.50
Prosite motif: PS00337 BETA_LACTAMASE_D
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVYYVGRKHNNTKQKHDKNHINSELNKSKVENKKEKINMVDYSDCFEGISGGAIFYNTK CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEECC NKEYNIYNKELIETRRSPCSTFKIVSTLIGLEKGVINSKESVMGYDGTEYPNKNWNKNLS CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCC LEEAFKESCVWYYKKLIDKVDAKSVQNILDDLKYGNCDISEWEGDLKNGKGHLNGFWLES HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCEEEEEC SLQISPKEQVQTMAKIFEGDTNFKKEHINILRDIMKIDVNDKNINVYGKTGTGFDEKNKR CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCE VDAWFVGMLEREGDTYYFAIKSDDSNKEITGPKVKEIAINIIKKYYSVRE EHHHEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GVYYVGRKHNNTKQKHDKNHINSELNKSKVENKKEKINMVDYSDCFEGISGGAIFYNTK CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEECC NKEYNIYNKELIETRRSPCSTFKIVSTLIGLEKGVINSKESVMGYDGTEYPNKNWNKNLS CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCC LEEAFKESCVWYYKKLIDKVDAKSVQNILDDLKYGNCDISEWEGDLKNGKGHLNGFWLES HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCEEEEEC SLQISPKEQVQTMAKIFEGDTNFKKEHINILRDIMKIDVNDKNINVYGKTGTGFDEKNKR CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCE VDAWFVGMLEREGDTYYFAIKSDDSNKEITGPKVKEIAINIIKKYYSVRE EHHHEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 3040663; 3260234; 2404938 [H]