| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is oraE
Identifier: 126698020
GI number: 126698020
Start: 529334
End: 531538
Strand: Direct
Name: oraE
Synonym: CD0446
Alternate gene names: NA
Gene position: 529334-531538 (Clockwise)
Preceding gene: 126698019
Following gene: 126698021
Centisome position: 12.34
GC content: 33.56
Gene sequence:
>2205_bases ATGTTAAAGGAAAATAAAAAATTGGATATAGACTATATATTAAAAGATTTGGATAAATATAAACCAAAACGAAGAGGTTG GGTTTGGAGAGAACACTTGGAAAATCTTGAAATGGGACCTTTTAAATATAAAGACTGTACAAAACCTTTAAAGAAGAGTG TAGGGCTACCATCATCTAAGTATTTCAATAATATAGACCCTCAACCAAGTCCAGTTATTACTACTGAAATAGCTTCTGGT AGATTTGAGGATGATATAAGAAGAATGAGAATGGCAGCTCATCATGGAGCTGACCATCTAATGGTTATCAGAACTGCTGG ACAATCACATTTTGATGGGCTTATAGAAGGAACTCCACAAGGTATAGGTGGAGTTCCAATAACAAGAAAACAAGTAAGAG CTCAAAGGAAGGCTCTTGATTTTATAGAAGAAGAAGTTGGTAGACCTATTAATTACCATTCATATGTAAGTGGTGTTGCT GGTCCTGAAGTAGCAGTAATGTTTGCTGAGGAAGGAGTCAATGGAGCACATCAAGACCCACAATATAATGTTCTGTATAG GAATATAAACATGGTAAGGTCTTTTGTAGATGCTTGTGAGGCAAAGAAAATAATGGCTTTTGCCAATATAGCTCAAATTG ATGGAGCACATAATGCTAATGCTACTGCTAGAGAAGCATGGAAGGTAATGCCTGAACTTATGGTTCAACACGCTTTAAAC TCTATATTCTCAGAAAAAATAGGTATAGATAAAAGTAATATATGCTTATCAACAGTTCCACCAACAGCACCTCCAGCACC ATGTTTAAAAATAGACTTACCTTACGCTGTTGCACTTAGAGAGTTATTTAGTGATTATAAGATGAGAGCTCAAATGAATA CTAAATATATGGAATCATCAACTAGAGAAGCAACAGTTACTCATGTATTAAACTTATTAACATCAGTATTAACTAGAGCT GACATACAATCAACTATAACACCTGATGAAGGTAGAAATGTACCTTGGCATATATACAATATAGAAGCATGTGATACAGC AAAGCAAGCTTTAGTTGGTATGGATGGGCTTATGGATATGATAGAACTTAAAGATGTCGGTGAATTAAGAGACAAAGCAA GAGAACTTAAAGAAAGAGCTGTATTATATATGGAAGAAATATCTGAAGTTGGTGGATATTTTGAATCTGTGGAACAAGGA TTTTTTGTTGATTCTGGAAATTATCCAGAAAGAAATGGTGATGGAATATCTAGAAAAATAAAAGGTGGAGTTGGTGAAGG TACTGTTTATGAAAGAGAAGAAGATTATTTAGCACCTGTAACTGCTCACTTTGGATACAATAATGTAGCTCAATATGATG AAAATGCTATAGATAATCCATCAATGTTAATAGATGGATGTACATTTGAAAATCCAGACAAAATAATATATATTGATGAG CTTGACGATTTTGATAATGTAGAAAATAGACTAAAAGAATCATATGAGTACAGAAATGGAACTAAAATTAAGCCTGAAAT GGAATGGTGTGCAGATGGAATTGTAATGATAACAATGATGCTTCCTACTGATAAAAGAACAGCAGAGTTTGCAGCTTTGG AATTTGTCAAAAAAATGAACTTACAAGAAATTGAGGTCATAAGTAGAGAAGTTATGCATGAATCTGAAGGGACTAGAATA GAAGTGAAAGGAAGAGTTCCGTTTGATATAGATTTAAACAATTTAGTAATACCAGAAGAACCTAAGGTACTAACTGATGA AGAAATAAGAGCAGATATAGAAGAAAAACCTATGAAAATAGTTTCAGCTACGGTTGGAGAAGATGAACATTCAGTTGGTT TAAGAGAAATAATAGATATAAAACATGGAGGTATTGAAAAATATGGCATAGAATGCCACTATCTAGGGACTTCTGTACCT GTAGAAAAATTGGTAGATGCAGCGATTGAACTGAATGCAGATGCAATACTTGCATCTACAATAATAAGTCATGATGATAT TCACTATAAAAACATGAAAAAATTACACGATTATTGTGTAGAAAAAGGTATAAGAGATAAAGTAATGATTGCGTGTGGAG GAACACAAGTAACACCTGAAATAGCTGTTGAACAAGGCATAGATGCTGGATTTGGAAGAAACAGCAAAGGCATACATGTA GCCACTTTCTTAGTTGAAAAAAGAAGAGAAATGAGTAATAAATAA
Upstream 100 bases:
>100_bases CTAAATCTAAAAATATAACGGTTAGAGAAGCAGGTTTGTTATTAGTTAAGGGTGAATATTGGGATGAAGTTACATGTTTA TTTAGAGAAGGGGTAGAATC
Downstream 100 bases:
>100_bases TGGAAAATAGCAAAGTTTCTTTAAAAATAGATGTGTTGGTAGCTGAAATTGGAAGTACTACTACAGTGGTAAATGCTTTC CACGATATTAATACTAACAA
Product: D-ornithine aminomutase E component
Products: NA
Alternate protein names: D-Lysine; D-Lysine 5 6-Aminomutase Alpha Subunit; D-Ornithine Aminomutase E Component; L-Beta-Lysine 5 6-Aminomutase Alpha Subunit; L-Beta-Lysine 5 6-Aminomutase Beta Subunit; D-Lysine 56-Aminomutase Beta Subunit; D-Lysine 56-Aminomutase Alpha Subunit; D-Ornithine 4 5-Aminomutase E Subunit; Beta-Lysine 56-Aminomutase Alpha Subunit; D-Lysine 5 6-Aminomutase Subunit Beta; D-Lysine 5 6-Aminomutase Beta Subunit; Cobalamin Vitamin; Beta-Lysine 5 6-Aminomutase Beta Subunit; Beta-Lysine 56-Aminomutase Beta Subunit; Lysine 5 6-Aminomutase Alpha Subunit; Lysine 5 6-Aminomutase Beta Subunit; Methylmalonyl-CoA Mutase C- Domain/Subunit
Number of amino acids: Translated: 734; Mature: 734
Protein sequence:
>734_residues MLKENKKLDIDYILKDLDKYKPKRRGWVWREHLENLEMGPFKYKDCTKPLKKSVGLPSSKYFNNIDPQPSPVITTEIASG RFEDDIRRMRMAAHHGADHLMVIRTAGQSHFDGLIEGTPQGIGGVPITRKQVRAQRKALDFIEEEVGRPINYHSYVSGVA GPEVAVMFAEEGVNGAHQDPQYNVLYRNINMVRSFVDACEAKKIMAFANIAQIDGAHNANATAREAWKVMPELMVQHALN SIFSEKIGIDKSNICLSTVPPTAPPAPCLKIDLPYAVALRELFSDYKMRAQMNTKYMESSTREATVTHVLNLLTSVLTRA DIQSTITPDEGRNVPWHIYNIEACDTAKQALVGMDGLMDMIELKDVGELRDKARELKERAVLYMEEISEVGGYFESVEQG FFVDSGNYPERNGDGISRKIKGGVGEGTVYEREEDYLAPVTAHFGYNNVAQYDENAIDNPSMLIDGCTFENPDKIIYIDE LDDFDNVENRLKESYEYRNGTKIKPEMEWCADGIVMITMMLPTDKRTAEFAALEFVKKMNLQEIEVISREVMHESEGTRI EVKGRVPFDIDLNNLVIPEEPKVLTDEEIRADIEEKPMKIVSATVGEDEHSVGLREIIDIKHGGIEKYGIECHYLGTSVP VEKLVDAAIELNADAILASTIISHDDIHYKNMKKLHDYCVEKGIRDKVMIACGGTQVTPEIAVEQGIDAGFGRNSKGIHV ATFLVEKRREMSNK
Sequences:
>Translated_734_residues MLKENKKLDIDYILKDLDKYKPKRRGWVWREHLENLEMGPFKYKDCTKPLKKSVGLPSSKYFNNIDPQPSPVITTEIASG RFEDDIRRMRMAAHHGADHLMVIRTAGQSHFDGLIEGTPQGIGGVPITRKQVRAQRKALDFIEEEVGRPINYHSYVSGVA GPEVAVMFAEEGVNGAHQDPQYNVLYRNINMVRSFVDACEAKKIMAFANIAQIDGAHNANATAREAWKVMPELMVQHALN SIFSEKIGIDKSNICLSTVPPTAPPAPCLKIDLPYAVALRELFSDYKMRAQMNTKYMESSTREATVTHVLNLLTSVLTRA DIQSTITPDEGRNVPWHIYNIEACDTAKQALVGMDGLMDMIELKDVGELRDKARELKERAVLYMEEISEVGGYFESVEQG FFVDSGNYPERNGDGISRKIKGGVGEGTVYEREEDYLAPVTAHFGYNNVAQYDENAIDNPSMLIDGCTFENPDKIIYIDE LDDFDNVENRLKESYEYRNGTKIKPEMEWCADGIVMITMMLPTDKRTAEFAALEFVKKMNLQEIEVISREVMHESEGTRI EVKGRVPFDIDLNNLVIPEEPKVLTDEEIRADIEEKPMKIVSATVGEDEHSVGLREIIDIKHGGIEKYGIECHYLGTSVP VEKLVDAAIELNADAILASTIISHDDIHYKNMKKLHDYCVEKGIRDKVMIACGGTQVTPEIAVEQGIDAGFGRNSKGIHV ATFLVEKRREMSNK >Mature_734_residues MLKENKKLDIDYILKDLDKYKPKRRGWVWREHLENLEMGPFKYKDCTKPLKKSVGLPSSKYFNNIDPQPSPVITTEIASG RFEDDIRRMRMAAHHGADHLMVIRTAGQSHFDGLIEGTPQGIGGVPITRKQVRAQRKALDFIEEEVGRPINYHSYVSGVA GPEVAVMFAEEGVNGAHQDPQYNVLYRNINMVRSFVDACEAKKIMAFANIAQIDGAHNANATAREAWKVMPELMVQHALN SIFSEKIGIDKSNICLSTVPPTAPPAPCLKIDLPYAVALRELFSDYKMRAQMNTKYMESSTREATVTHVLNLLTSVLTRA DIQSTITPDEGRNVPWHIYNIEACDTAKQALVGMDGLMDMIELKDVGELRDKARELKERAVLYMEEISEVGGYFESVEQG FFVDSGNYPERNGDGISRKIKGGVGEGTVYEREEDYLAPVTAHFGYNNVAQYDENAIDNPSMLIDGCTFENPDKIIYIDE LDDFDNVENRLKESYEYRNGTKIKPEMEWCADGIVMITMMLPTDKRTAEFAALEFVKKMNLQEIEVISREVMHESEGTRI EVKGRVPFDIDLNNLVIPEEPKVLTDEEIRADIEEKPMKIVSATVGEDEHSVGLREIIDIKHGGIEKYGIECHYLGTSVP VEKLVDAAIELNADAILASTIISHDDIHYKNMKKLHDYCVEKGIRDKVMIACGGTQVTPEIAVEQGIDAGFGRNSKGIHV ATFLVEKRREMSNK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 82607; Mature: 82607
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKENKKLDIDYILKDLDKYKPKRRGWVWREHLENLEMGPFKYKDCTKPLKKSVGLPSSK CCCCCCCCCHHHHHHHHHHCCCHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHH YFNNIDPQPSPVITTEIASGRFEDDIRRMRMAAHHGADHLMVIRTAGQSHFDGLIEGTPQ HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHCHHHCCCCC GIGGVPITRKQVRAQRKALDFIEEEVGRPINYHSYVSGVAGPEVAVMFAEEGVNGAHQDP CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCCC QYNVLYRNINMVRSFVDACEAKKIMAFANIAQIDGAHNANATAREAWKVMPELMVQHALN CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH SIFSEKIGIDKSNICLSTVPPTAPPAPCLKIDLPYAVALRELFSDYKMRAQMNTKYMESS HHHHHHCCCCCCCEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCC TREATVTHVLNLLTSVLTRADIQSTITPDEGRNVPWHIYNIEACDTAKQALVGMDGLMDM CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH IELKDVGELRDKARELKERAVLYMEEISEVGGYFESVEQGFFVDSGNYPERNGDGISRKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHH KGGVGEGTVYEREEDYLAPVTAHFGYNNVAQYDENAIDNPSMLIDGCTFENPDKIIYIDE CCCCCCCCEEECCCCCCCCEEECCCCCCHHHCCCCCCCCCCEEEECCCCCCCCCEEEEEC LDDFDNVENRLKESYEYRNGTKIKPEMEWCADGIVMITMMLPTDKRTAEFAALEFVKKMN CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCC LQEIEVISREVMHESEGTRIEVKGRVPFDIDLNNLVIPEEPKVLTDEEIRADIEEKPMKI HHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCEECCCCCCCCCCHHHHCCHHHCCHHH VSATVGEDEHSVGLREIIDIKHGGIEKYGIECHYLGTSVPVEKLVDAAIELNADAILAST HHHHCCCCCCCCCHHHHHHHCCCCCEEECCEEEEECCCCCHHHHHHHHHHCCCHHHHHHH IISHDDIHYKNMKKLHDYCVEKGIRDKVMIACGGTQVTPEIAVEQGIDAGFGRNSKGIHV HHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCEEH ATFLVEKRREMSNK HHHHHHHHHHHCCC >Mature Secondary Structure MLKENKKLDIDYILKDLDKYKPKRRGWVWREHLENLEMGPFKYKDCTKPLKKSVGLPSSK CCCCCCCCCHHHHHHHHHHCCCHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHH YFNNIDPQPSPVITTEIASGRFEDDIRRMRMAAHHGADHLMVIRTAGQSHFDGLIEGTPQ HCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHCHHHCCCCC GIGGVPITRKQVRAQRKALDFIEEEVGRPINYHSYVSGVAGPEVAVMFAEEGVNGAHQDP CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCCC QYNVLYRNINMVRSFVDACEAKKIMAFANIAQIDGAHNANATAREAWKVMPELMVQHALN CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH SIFSEKIGIDKSNICLSTVPPTAPPAPCLKIDLPYAVALRELFSDYKMRAQMNTKYMESS HHHHHHCCCCCCCEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCC TREATVTHVLNLLTSVLTRADIQSTITPDEGRNVPWHIYNIEACDTAKQALVGMDGLMDM CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH IELKDVGELRDKARELKERAVLYMEEISEVGGYFESVEQGFFVDSGNYPERNGDGISRKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHH KGGVGEGTVYEREEDYLAPVTAHFGYNNVAQYDENAIDNPSMLIDGCTFENPDKIIYIDE CCCCCCCCEEECCCCCCCCEEECCCCCCHHHCCCCCCCCCCEEEECCCCCCCCCEEEEEC LDDFDNVENRLKESYEYRNGTKIKPEMEWCADGIVMITMMLPTDKRTAEFAALEFVKKMN CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCC LQEIEVISREVMHESEGTRIEVKGRVPFDIDLNNLVIPEEPKVLTDEEIRADIEEKPMKI HHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCEECCCCCCCCCCHHHHCCHHHCCHHH VSATVGEDEHSVGLREIIDIKHGGIEKYGIECHYLGTSVPVEKLVDAAIELNADAILAST HHHHCCCCCCCCCHHHHHHHCCCCCEEECCEEEEECCCCCHHHHHHHHHHCCCHHHHHHH IISHDDIHYKNMKKLHDYCVEKGIRDKVMIACGGTQVTPEIAVEQGIDAGFGRNSKGIHV HHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCEEH ATFLVEKRREMSNK HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA