| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126697991
Identifier: 126697991
GI number: 126697991
Start: 491809
End: 493350
Strand: Direct
Name: 126697991
Synonym: CD0420
Alternate gene names: NA
Gene position: 491809-493350 (Clockwise)
Preceding gene: 126697990
Following gene: 126697992
Centisome position: 11.46
GC content: 36.77
Gene sequence:
>1542_bases ATGAAAACCAGTTTGAAAAAGAATAATAAGTTTTGGACGGTAGCACTTGCGGTAATTGTAAGTATTAGTTGTATTTTAGG TCTTTGGACGGTTGTTTATGCACAGGAGCAAAAATCTGAAGCTCCAACAAAAAACGAAGCTGTTCAAACGGAAGTTGAAG TAAATGTAAGGTATATCTTTGAAGATGAAAAGGTCTTTAAGGAAGAAAAGATAAAGGCTGAGAAAGGACAACTTATTGAT GGCGGAGATCTTCCAATGCTCCCAGATGATATGAAATTCATTGATGAATTTCTGTTTTATGAGGTAAAGGGAGATGGAAA AGATGAGATTATACGTAAGATAGCAAAGATAGAGGTTAAGAATAAGGAAACGCAGACGGAAGAAGAAAAGCCAAAGCAGG ATGAATGCACTCAGACGGAAGATAAGGGAACGCAGACAGAGCTTTCTAAAGACGATATTTCAAAAATAGAAAAAGAGGCA AAAGAGCTTCAGGATAAACTTGATAAGTTAAATTGCGAACTTAAGGACAAAGACAAATTAAGTGATAAGCAAAAGAATAA AATTAAAGACCTTGAAGATGAAATTGATAGCCTGAAAGAAAAAATAAAGAAAGATAAGGGAAATAAGGACTTATCAAAAG ATATGAAAAAGGAAATAGATAAGCTGACGGAAAAGGTGAAAGAGCTTGAGAAAAAGGCAACTGAAACAAATAAAGCTCCT GTAACATCACAATCAGTTACACCGATTAGTCCTATTTCCGGAATTAAGACAAGTTCAGGTATTTCTCCTCAAACACCACA GACTTCTGTAAGTAGTACCGGTAAAGGCTCATCGGATTCGGTAAGCTCAGGTAATACTACAAAGGATACCGGTAAAGGCA AAACGGAAGTAAAGGAGAAAGAAAAGGAAGTTCGCTATCCCAATAAGTTGACGGCAAAAGCTCCTGCGAATAACAGTCAG GATTCATCAATGGGGTCTGCAAGTAAGAGTGTAAACACCAACAAGGGAGTAGCTTCATCTCCGTCAAAGGCGAGAGCATC CGTTACGGAGAATAAAGATAATGCAAATAAGGAGTATCCGATTCATCATGGAGATAGCAGCGATAACAAAGAAACGGATC AGTATTCGGCAGATGCAAGGCAGTTTATTACCTTTCAAACGAAAAACGGTAAGACTTTTTATTTAATCATCAATCACGAT GAAGATAGTGAGAATGTAATGCTTCTTACGGAAGTATCTGAAGATGATTTGCTTAACATGGTGGAGAAAAAAGAAGCACC AAAGCAGGAAGTAGTAAAAGAAGAACCTGTTAAGGAAGAAGTGAAGCCTGAGAAGAAGGACGAAAAGAGTAATTTAGGAA CTTATATTATTTTGCTTCTTGTAGTAGGTGGTGCATTAGGAGCAGGCTACTATTTTAAGGTTGTGAAAAAGAAAGAAGAT AAAGAACTTGAAGCCTTAGAGGAGGAAGATGATGATTTCTTTTCTGAATCTGAAAGCGAGGAAGAAATAAATGATGCAGA TGAAGTAGAAGATGAAGAATAA
Upstream 100 bases:
>100_bases GAAGAAATCATAGCCATTTGCAGAAAGAATAACATCACAATCAGCGATTTGATGGCAAAGGTAAACAGACAAAAAGCAGA AATGAAAAAGGAGAAAACAA
Downstream 100 bases:
>100_bases ACGCACCTAAAAACATATTATTTTGGGTGCAAAGTTAGGGCGGGAGAGTAACATCTTTCGCCCTATTTTGATTTATAACA GGAGGAAAACACAGATGAAG
Product: cell surface protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 513; Mature: 513
Protein sequence:
>513_residues MKTSLKKNNKFWTVALAVIVSISCILGLWTVVYAQEQKSEAPTKNEAVQTEVEVNVRYIFEDEKVFKEEKIKAEKGQLID GGDLPMLPDDMKFIDEFLFYEVKGDGKDEIIRKIAKIEVKNKETQTEEEKPKQDECTQTEDKGTQTELSKDDISKIEKEA KELQDKLDKLNCELKDKDKLSDKQKNKIKDLEDEIDSLKEKIKKDKGNKDLSKDMKKEIDKLTEKVKELEKKATETNKAP VTSQSVTPISPISGIKTSSGISPQTPQTSVSSTGKGSSDSVSSGNTTKDTGKGKTEVKEKEKEVRYPNKLTAKAPANNSQ DSSMGSASKSVNTNKGVASSPSKARASVTENKDNANKEYPIHHGDSSDNKETDQYSADARQFITFQTKNGKTFYLIINHD EDSENVMLLTEVSEDDLLNMVEKKEAPKQEVVKEEPVKEEVKPEKKDEKSNLGTYIILLLVVGGALGAGYYFKVVKKKED KELEALEEEDDDFFSESESEEEINDADEVEDEE
Sequences:
>Translated_513_residues MKTSLKKNNKFWTVALAVIVSISCILGLWTVVYAQEQKSEAPTKNEAVQTEVEVNVRYIFEDEKVFKEEKIKAEKGQLID GGDLPMLPDDMKFIDEFLFYEVKGDGKDEIIRKIAKIEVKNKETQTEEEKPKQDECTQTEDKGTQTELSKDDISKIEKEA KELQDKLDKLNCELKDKDKLSDKQKNKIKDLEDEIDSLKEKIKKDKGNKDLSKDMKKEIDKLTEKVKELEKKATETNKAP VTSQSVTPISPISGIKTSSGISPQTPQTSVSSTGKGSSDSVSSGNTTKDTGKGKTEVKEKEKEVRYPNKLTAKAPANNSQ DSSMGSASKSVNTNKGVASSPSKARASVTENKDNANKEYPIHHGDSSDNKETDQYSADARQFITFQTKNGKTFYLIINHD EDSENVMLLTEVSEDDLLNMVEKKEAPKQEVVKEEPVKEEVKPEKKDEKSNLGTYIILLLVVGGALGAGYYFKVVKKKED KELEALEEEDDDFFSESESEEEINDADEVEDEE >Mature_513_residues MKTSLKKNNKFWTVALAVIVSISCILGLWTVVYAQEQKSEAPTKNEAVQTEVEVNVRYIFEDEKVFKEEKIKAEKGQLID GGDLPMLPDDMKFIDEFLFYEVKGDGKDEIIRKIAKIEVKNKETQTEEEKPKQDECTQTEDKGTQTELSKDDISKIEKEA KELQDKLDKLNCELKDKDKLSDKQKNKIKDLEDEIDSLKEKIKKDKGNKDLSKDMKKEIDKLTEKVKELEKKATETNKAP VTSQSVTPISPISGIKTSSGISPQTPQTSVSSTGKGSSDSVSSGNTTKDTGKGKTEVKEKEKEVRYPNKLTAKAPANNSQ DSSMGSASKSVNTNKGVASSPSKARASVTENKDNANKEYPIHHGDSSDNKETDQYSADARQFITFQTKNGKTFYLIINHD EDSENVMLLTEVSEDDLLNMVEKKEAPKQEVVKEEPVKEEVKPEKKDEKSNLGTYIILLLVVGGALGAGYYFKVVKKKED KELEALEEEDDDFFSESESEEEINDADEVEDEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57535; Mature: 57535
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTSLKKNNKFWTVALAVIVSISCILGLWTVVYAQEQKSEAPTKNEAVQTEVEVNVRYIF CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEE EDEKVFKEEKIKAEKGQLIDGGDLPMLPDDMKFIDEFLFYEVKGDGKDEIIRKIAKIEVK CCHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCC NKETQTEEEKPKQDECTQTEDKGTQTELSKDDISKIEKEAKELQDKLDKLNCELKDKDKL CCCCCCHHCCCCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH SDKQKNKIKDLEDEIDSLKEKIKKDKGNKDLSKDMKKEIDKLTEKVKELEKKATETNKAP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC VTSQSVTPISPISGIKTSSGISPQTPQTSVSSTGKGSSDSVSSGNTTKDTGKGKTEVKEK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH EKEVRYPNKLTAKAPANNSQDSSMGSASKSVNTNKGVASSPSKARASVTENKDNANKEYP HHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC IHHGDSSDNKETDQYSADARQFITFQTKNGKTFYLIINHDEDSENVMLLTEVSEDDLLNM CCCCCCCCCCCCHHHHHCHHEEEEEEECCCCEEEEEEECCCCCCCEEEEEECCHHHHHHH VEKKEAPKQEVVKEEPVKEEVKPEKKDEKSNLGTYIILLLVVGGALGAGYYFKVVKKKED HHHHCCCHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEEHHCCCC KELEALEEEDDDFFSESESEEEINDADEVEDEE HHHHHHHCCCHHHHCCCCCHHHCCCHHCCCCCC >Mature Secondary Structure MKTSLKKNNKFWTVALAVIVSISCILGLWTVVYAQEQKSEAPTKNEAVQTEVEVNVRYIF CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEE EDEKVFKEEKIKAEKGQLIDGGDLPMLPDDMKFIDEFLFYEVKGDGKDEIIRKIAKIEVK CCHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCC NKETQTEEEKPKQDECTQTEDKGTQTELSKDDISKIEKEAKELQDKLDKLNCELKDKDKL CCCCCCHHCCCCCHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH SDKQKNKIKDLEDEIDSLKEKIKKDKGNKDLSKDMKKEIDKLTEKVKELEKKATETNKAP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC VTSQSVTPISPISGIKTSSGISPQTPQTSVSSTGKGSSDSVSSGNTTKDTGKGKTEVKEK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH EKEVRYPNKLTAKAPANNSQDSSMGSASKSVNTNKGVASSPSKARASVTENKDNANKEYP HHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC IHHGDSSDNKETDQYSADARQFITFQTKNGKTFYLIINHDEDSENVMLLTEVSEDDLLNM CCCCCCCCCCCCHHHHHCHHEEEEEEECCCCEEEEEEECCCCCCCEEEEEECCHHHHHHH VEKKEAPKQEVVKEEPVKEEVKPEKKDEKSNLGTYIILLLVVGGALGAGYYFKVVKKKED HHHHCCCHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEEHHCCCC KELEALEEEDDDFFSESESEEEINDADEVEDEE HHHHHHHCCCHHHHCCCCCHHHCCCHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA