| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
Click here to switch to the map view.
The map label for this gene is 126697989
Identifier: 126697989
GI number: 126697989
Start: 489451
End: 491583
Strand: Direct
Name: 126697989
Synonym: CD0419
Alternate gene names: NA
Gene position: 489451-491583 (Clockwise)
Preceding gene: 126697988
Following gene: 126697990
Centisome position: 11.41
GC content: 37.13
Gene sequence:
>2133_bases ATGGGAAAGAAGCTGAAAAAGGATTTTAAGGAAAGGCATAAGGCAAGCCTTGAAAGAGAGATGTTTCATAGTAAAACAGA TACGATACCTGAAGAAAGTAAGCTAAAACATAACGATGATTACAGAGGTAAAATCGTTCATGAGAAAGAACGGTTTCAGG ATAAAGTGCATGAAAAAACAAGTAAGGTAAGTGCTGATAATGAAAAGTCTTATGGAACATCCAAGAGAAACGAAAAATAT AGAGCTTCAGATAAGGGAGACGTAAATTCCGCAATTGAAACGGGAAGATCAGATTATATTACGGAGGTTAAGGATGGAAA AAGCTATGATCCTTTAGGAAAAGACCTTGATAATGATGGGATTATAGACAGATACGATAATGACTTTAGGGATAGCGACT ATTTTGAGTCAACCTATGATGTCGAGGATAATCTTCATCATAAAGCAGAAAATACAAATAGTTTCTCAAAAAGCCAAAAA GCTCAAAAGAGCAGGTATAAGAGGAAAAACTACACCGATAGCCTTTATACAAGGAAAAAGGATGATGTGTTAAAGGAAAA TAAGCTTGAAGATAAAAAGACTGGAAAAGATACTGCAAGCAAAAAAGTTCATAGCAGTATTTATAAAGAGCAGAAGAAAA AGCTAAAAAAAGACATGGTAAAGGTATCTGCCCTTTCAGGACTTGCTAAAGGAAGTGAAACCGTAAGAGATTACTTATCT CATGGAAGTGATGAAAATCAAGGAGTGGAAGCAGGAGAAAAGACAGCAGATACAAGCTCAAAACTCATTCATGGCATAAA GAATTACTCGGATAAGAAAAGAGCTAAAAGAGGCTATGACCTTACAAATAAGGACTATAAAATCAGAAAACGTAAGTCAA AGTTGGAATTTCGTGATGCCAAAAAGGAACTGAAAAAGACGGATGAGTATAAAAGAGCAAGTGCATATAAAAGATTTCAA AAGAAAAATCAGGTAAAGGCAGCAATTTCTCGTGAGAATAAGTCAAGGCTTAGAGATCGAATTAAAGAGGGACTTATCGG AACACTGAAAAGCTCAAAGGATATGATTATCCGAAAAGCAAAAGGACTAATGCTTATTTTCATAGGTATCATTATTTTAG GGACTTTTGTGATTAACTTCGCAGGAACGGGAATGACAGGCTTTATGAACTCTACAAGCTCTGTGCTTACAACAAGCTAT TTATCAAAGCCAAATGTCCTAAGTGAAATCAATCAGAAATTTTCAGATATGGAGGGTAAGCTTCAAAGTGAAGTTGACCA TGTGAAAGAAAATTATCCCGGATATGATGAATATATCTTAAATAATACAGAATACATCGGTCATAATGTCCATGAGCTTT TATCCTACATTACATCAAGGTGCGGAGAGGTAAAGAGTGTATCGGAAGTAGAATCCATATTAAAAGAATTATTTGAGTCC ATGTATGACCTTGAGTATAGGGAAGAAATTGAAATCAGATACAGGACGGTTACAAAAACCTATACCGATGAAGATGGCAA TGAATATACCGAAAGCCACGAAGAACCTTATGAGTATAAAAAACTCATCGTAACGCTTCATAAAAAAGAGATGGACAGTA TTATCCGAAAGGTCTTTGCAAACTATCCCGATAATCTAAAGCACTATGAAGCCTTGTTCCTTGCACAAGGCAATATGAGA GAAGCCTTTGGTAATTCTGACCTTATCAGTGCAAATGGAGGTATTGGCGGTGGAAAAGAGTATGAGGCATCTACGGAAGT ACAAAAGAAGATTGTTAATGCTGCATACATTACGCCATCTCCGGGTGCAGGCTGGTGTGCCATGTGGGTATCACAGGTCT ATCAAAATGCAGGACTTGGATATATAGGCGGGAATGCCTGTGATATGTACCGAAACTATACCTTTACATCAGACAGGTCA AAGCTAAAAGTGGGAATGCTTGTGGCAGTTGAAAGCAGCAGTAGCGGAAGCAGTGCAGGGCTTACCTATGGTCATGTAGG TATTTACATTGGAGATGGAAAAGTGATTGATAACATCGGTCGAATAAGAGTAACTACCTTAGATGATTGGATAGCAACAT TTTGTAAGCACCATCCCGTAGGATTCGGTTTTCCGCCAAATGTAAAGAAATAG
Upstream 100 bases:
>100_bases TTTCTTTGGAAATACCATTGTGCCTTTCCTTGATAAGTTTCCGAAAGATACGATTCTTTATCAGAAGATGACTACCAAGC CGGAAGAAGTGAGGTAGCCT
Downstream 100 bases:
>100_bases GAGGTAACAATTTGAAAAAGGAACTGATAGCAGTAAAAAACAGAATAAAAAAGTTAAAGGATAAAAAGGCTCTGATTGAT GAAGAATTGGAGCCTTTATT
Product: hypothetical protein
Products: NA
Alternate protein names: NlpC/P60 Family Protein; Helicase; Conjugative Transposon Membrane Protein; Peptidase; Conjugative Transposon Cell Wall Hydrolase; Superfamily II DNA And RNA Helicase; DNA Methyltransfarase; Conjugative Transposon DNA Recombination Protein
Number of amino acids: Translated: 710; Mature: 709
Protein sequence:
>710_residues MGKKLKKDFKERHKASLEREMFHSKTDTIPEESKLKHNDDYRGKIVHEKERFQDKVHEKTSKVSADNEKSYGTSKRNEKY RASDKGDVNSAIETGRSDYITEVKDGKSYDPLGKDLDNDGIIDRYDNDFRDSDYFESTYDVEDNLHHKAENTNSFSKSQK AQKSRYKRKNYTDSLYTRKKDDVLKENKLEDKKTGKDTASKKVHSSIYKEQKKKLKKDMVKVSALSGLAKGSETVRDYLS HGSDENQGVEAGEKTADTSSKLIHGIKNYSDKKRAKRGYDLTNKDYKIRKRKSKLEFRDAKKELKKTDEYKRASAYKRFQ KKNQVKAAISRENKSRLRDRIKEGLIGTLKSSKDMIIRKAKGLMLIFIGIIILGTFVINFAGTGMTGFMNSTSSVLTTSY LSKPNVLSEINQKFSDMEGKLQSEVDHVKENYPGYDEYILNNTEYIGHNVHELLSYITSRCGEVKSVSEVESILKELFES MYDLEYREEIEIRYRTVTKTYTDEDGNEYTESHEEPYEYKKLIVTLHKKEMDSIIRKVFANYPDNLKHYEALFLAQGNMR EAFGNSDLISANGGIGGGKEYEASTEVQKKIVNAAYITPSPGAGWCAMWVSQVYQNAGLGYIGGNACDMYRNYTFTSDRS KLKVGMLVAVESSSSGSSAGLTYGHVGIYIGDGKVIDNIGRIRVTTLDDWIATFCKHHPVGFGFPPNVKK
Sequences:
>Translated_710_residues MGKKLKKDFKERHKASLEREMFHSKTDTIPEESKLKHNDDYRGKIVHEKERFQDKVHEKTSKVSADNEKSYGTSKRNEKY RASDKGDVNSAIETGRSDYITEVKDGKSYDPLGKDLDNDGIIDRYDNDFRDSDYFESTYDVEDNLHHKAENTNSFSKSQK AQKSRYKRKNYTDSLYTRKKDDVLKENKLEDKKTGKDTASKKVHSSIYKEQKKKLKKDMVKVSALSGLAKGSETVRDYLS HGSDENQGVEAGEKTADTSSKLIHGIKNYSDKKRAKRGYDLTNKDYKIRKRKSKLEFRDAKKELKKTDEYKRASAYKRFQ KKNQVKAAISRENKSRLRDRIKEGLIGTLKSSKDMIIRKAKGLMLIFIGIIILGTFVINFAGTGMTGFMNSTSSVLTTSY LSKPNVLSEINQKFSDMEGKLQSEVDHVKENYPGYDEYILNNTEYIGHNVHELLSYITSRCGEVKSVSEVESILKELFES MYDLEYREEIEIRYRTVTKTYTDEDGNEYTESHEEPYEYKKLIVTLHKKEMDSIIRKVFANYPDNLKHYEALFLAQGNMR EAFGNSDLISANGGIGGGKEYEASTEVQKKIVNAAYITPSPGAGWCAMWVSQVYQNAGLGYIGGNACDMYRNYTFTSDRS KLKVGMLVAVESSSSGSSAGLTYGHVGIYIGDGKVIDNIGRIRVTTLDDWIATFCKHHPVGFGFPPNVKK >Mature_709_residues GKKLKKDFKERHKASLEREMFHSKTDTIPEESKLKHNDDYRGKIVHEKERFQDKVHEKTSKVSADNEKSYGTSKRNEKYR ASDKGDVNSAIETGRSDYITEVKDGKSYDPLGKDLDNDGIIDRYDNDFRDSDYFESTYDVEDNLHHKAENTNSFSKSQKA QKSRYKRKNYTDSLYTRKKDDVLKENKLEDKKTGKDTASKKVHSSIYKEQKKKLKKDMVKVSALSGLAKGSETVRDYLSH GSDENQGVEAGEKTADTSSKLIHGIKNYSDKKRAKRGYDLTNKDYKIRKRKSKLEFRDAKKELKKTDEYKRASAYKRFQK KNQVKAAISRENKSRLRDRIKEGLIGTLKSSKDMIIRKAKGLMLIFIGIIILGTFVINFAGTGMTGFMNSTSSVLTTSYL SKPNVLSEINQKFSDMEGKLQSEVDHVKENYPGYDEYILNNTEYIGHNVHELLSYITSRCGEVKSVSEVESILKELFESM YDLEYREEIEIRYRTVTKTYTDEDGNEYTESHEEPYEYKKLIVTLHKKEMDSIIRKVFANYPDNLKHYEALFLAQGNMRE AFGNSDLISANGGIGGGKEYEASTEVQKKIVNAAYITPSPGAGWCAMWVSQVYQNAGLGYIGGNACDMYRNYTFTSDRSK LKVGMLVAVESSSSGSSAGLTYGHVGIYIGDGKVIDNIGRIRVTTLDDWIATFCKHHPVGFGFPPNVKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80929; Mature: 80798
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKKLKKDFKERHKASLEREMFHSKTDTIPEESKLKHNDDYRGKIVHEKERFQDKVHEKT CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCEECHHHHHHHHHHHHH SKVSADNEKSYGTSKRNEKYRASDKGDVNSAIETGRSDYITEVKDGKSYDPLGKDLDNDG HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCC IIDRYDNDFRDSDYFESTYDVEDNLHHKAENTNSFSKSQKAQKSRYKRKNYTDSLYTRKK CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCH DDVLKENKLEDKKTGKDTASKKVHSSIYKEQKKKLKKDMVKVSALSGLAKGSETVRDYLS HHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH HGSDENQGVEAGEKTADTSSKLIHGIKNYSDKKRAKRGYDLTNKDYKIRKRKSKLEFRDA CCCCCCCCCCCCCHHCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH KKELKKTDEYKRASAYKRFQKKNQVKAAISRENKSRLRDRIKEGLIGTLKSSKDMIIRKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH KGLMLIFIGIIILGTFVINFAGTGMTGFMNSTSSVLTTSYLSKPNVLSEINQKFSDMEGK CCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH LQSEVDHVKENYPGYDEYILNNTEYIGHNVHELLSYITSRCGEVKSVSEVESILKELFES HHHHHHHHHHCCCCHHHHHCCCCHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH MYDLEYREEIEIRYRTVTKTYTDEDGNEYTESHEEPYEYKKLIVTLHKKEMDSIIRKVFA HHCCCHHHHHEEEEEEEEEEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH NYPDNLKHYEALFLAQGNMREAFGNSDLISANGGIGGGKEYEASTEVQKKIVNAAYITPS CCCCCHHHHHHHHHCCCCHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHEECCC PGAGWCAMWVSQVYQNAGLGYIGGNACDMYRNYTFTSDRSKLKVGMLVAVESSSSGSSAG CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCC LTYGHVGIYIGDGKVIDNIGRIRVTTLDDWIATFCKHHPVGFGFPPNVKK EEECEEEEEECCCCEECCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure GKKLKKDFKERHKASLEREMFHSKTDTIPEESKLKHNDDYRGKIVHEKERFQDKVHEKT CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCEECHHHHHHHHHHHHH SKVSADNEKSYGTSKRNEKYRASDKGDVNSAIETGRSDYITEVKDGKSYDPLGKDLDNDG HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCC IIDRYDNDFRDSDYFESTYDVEDNLHHKAENTNSFSKSQKAQKSRYKRKNYTDSLYTRKK CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCH DDVLKENKLEDKKTGKDTASKKVHSSIYKEQKKKLKKDMVKVSALSGLAKGSETVRDYLS HHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH HGSDENQGVEAGEKTADTSSKLIHGIKNYSDKKRAKRGYDLTNKDYKIRKRKSKLEFRDA CCCCCCCCCCCCCHHCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH KKELKKTDEYKRASAYKRFQKKNQVKAAISRENKSRLRDRIKEGLIGTLKSSKDMIIRKA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH KGLMLIFIGIIILGTFVINFAGTGMTGFMNSTSSVLTTSYLSKPNVLSEINQKFSDMEGK CCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH LQSEVDHVKENYPGYDEYILNNTEYIGHNVHELLSYITSRCGEVKSVSEVESILKELFES HHHHHHHHHHCCCCHHHHHCCCCHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH MYDLEYREEIEIRYRTVTKTYTDEDGNEYTESHEEPYEYKKLIVTLHKKEMDSIIRKVFA HHCCCHHHHHEEEEEEEEEEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH NYPDNLKHYEALFLAQGNMREAFGNSDLISANGGIGGGKEYEASTEVQKKIVNAAYITPS CCCCCHHHHHHHHHCCCCHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHEECCC PGAGWCAMWVSQVYQNAGLGYIGGNACDMYRNYTFTSDRSKLKVGMLVAVESSSSGSSAG CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCC LTYGHVGIYIGDGKVIDNIGRIRVTTLDDWIATFCKHHPVGFGFPPNVKK EEECEEEEEECCCCEECCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA